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Table 5 Significant words related to the STRE and MIG1 motifs. The words marked * actually score better with the variant STRE' motif (0.60 and 0.55 respectively).

From: Correlating overrepresented upstream motifs to gene expression: a computational approach to regulatory element discovery in eukaryotes

word

genes

timepoints

score

  

1

2

3

4

5

6

7

STRE

MIG1

CCACCCCC

35

-

-

-

-

-

6.39

-

0.82

0.53

CCCCCCCT

28

-

-

-

-

-

6.01

-

0.79

0.71

CCCCTG

28

-

-

-

7.06

6.09

7.00

-

0.59

0.54

CAGCCCCT

23

-

-

-

-

-

6.42

-

0.59

0.42

GCCCCT*

40

-

-

-

-

-

7.05

-

0.59

0.56

GCCCCCTG*

17

-

-

-

-

6.07

-

-

0.47

0.46

TACCCC

25

-

-

-

-

-

6.09

-

0.55

0.85

CCCCCC

56

-

-

-

-

6.48

6.55

6.10

0.72

0.80

ACCCCT

29

-

-

-

-

-

7.42

-

0.63

0.65

GGCCCC

16

-

-

-

-

6.71

-

-

0.52

0.56