From: Evaluation of normalization methods for microarray data
List of normalization methods including print-tip scale normalization | ||
---|---|---|
Method | Notation | Description |
 | O | Original data |
Global | G | Global median normalization |
 | GP | Global median normalization on each print-tip |
 | GPS | Global median normalization on each print-tip with scale normalization |
 | G.s | Global median normalization and between-slide scale normalization |
 | GP.s | Global median normalization on each print-tip and between-slide scale normalization |
 | GPS.s | Global median normalization on print-tip with scale normalization and between-slide scale normalization |
Linear | L | Intensity dependent linear regression normalization |
 | LP | Intensity dependent linear regression normalization on each print-tip |
 | LPS | Intensity dependent linear regression normalization on each print-tip with scale normalization |
 | L.s | Intensity dependent linear regression normalization and between-slide scale normalization |
 | LP.s | Intensity dependent linear regression normalization on each print-tip and between-slide scale normalization |
 | LPS.s | Intensity dependent linear regression normalization on each print-tip with scale normalization and between-slide scale normalization |
Nonlinear | N | Intensity dependent nonlinear regression normalization (LOWESS) |
 | NP | Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip |
 | NPS | Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip with scale normalization |
 | N.s | Intensity dependent nonlinear regression normalization (LOWESS) and between-slide scale normalization |
 | NP.s | Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip and between-slide scale normalization |
 | NPS.s | Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip with scale normalization and between-slide scale normalization |