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Table 2 List of Normalization Methods

From: Evaluation of normalization methods for microarray data

List of normalization methods including print-tip scale normalization
Method Notation Description
  O Original data
Global G Global median normalization
  GP Global median normalization on each print-tip
  GPS Global median normalization on each print-tip with scale normalization
  G.s Global median normalization and between-slide scale normalization
  GP.s Global median normalization on each print-tip and between-slide scale normalization
  GPS.s Global median normalization on print-tip with scale normalization and between-slide scale normalization
Linear L Intensity dependent linear regression normalization
  LP Intensity dependent linear regression normalization on each print-tip
  LPS Intensity dependent linear regression normalization on each print-tip with scale normalization
  L.s Intensity dependent linear regression normalization and between-slide scale normalization
  LP.s Intensity dependent linear regression normalization on each print-tip and between-slide scale normalization
  LPS.s Intensity dependent linear regression normalization on each print-tip with scale normalization and between-slide scale normalization
Nonlinear N Intensity dependent nonlinear regression normalization (LOWESS)
  NP Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip
  NPS Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip with scale normalization
  N.s Intensity dependent nonlinear regression normalization (LOWESS) and between-slide scale normalization
  NP.s Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip and between-slide scale normalization
  NPS.s Intensity dependent nonlinear regression normalization (LOWESS) on each print-tip with scale normalization and between-slide scale normalization