TY - JOUR AU - Schneider, T. D. AU - Stormo, G. D. AU - Haemer, J. S. AU - Gold, L. PY - 1982 DA - 1982// TI - A design for computer nucleic-acid-sequence storage, retrieval, and manipulation JO - Nucleic Acids Res VL - 10 UR - https://doi.org/10.1093/nar/10.9.3013 DO - 10.1093/nar/10.9.3013 ID - Schneider1982 ER - TY - JOUR AU - Shannon, C. E. PY - 1948 DA - 1948// TI - A mathematical theory of communication JO - Bell System Technical Journal VL - 27 UR - https://doi.org/10.1002/j.1538-7305.1948.tb01338.x DO - 10.1002/j.1538-7305.1948.tb01338.x ID - Shannon1948 ER - TY - JOUR AU - Schneider, T. D. PY - 1994 DA - 1994// TI - Sequence logos, machine/ channel capacity, Maxwell's demon, and molecular computers: a review of the theory of molecular machines JO - Nanotechnology VL - 5 UR - https://doi.org/10.1088/0957-4484/5/1/001 DO - 10.1088/0957-4484/5/1/001 ID - Schneider1994 ER - TY - JOUR AU - Schneider, T. D. PY - 1997 DA - 1997// TI - Information content of individual genetic sequences JO - J Theor Biol VL - 189 UR - https://doi.org/10.1006/jtbi.1997.0540 DO - 10.1006/jtbi.1997.0540 ID - Schneider1997 ER - TY - JOUR AU - Schneider, T. D. PY - 1997 DA - 1997// TI - Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.21.4408 DO - 10.1093/nar/25.21.4408 ID - Schneider1997 ER - TY - JOUR AU - Rogan, P. K. AU - Faux, B. M. AU - Schneider, T. D. PY - 1998 DA - 1998// TI - Information analysis of human splice site mutations JO - Hum Mutat VL - 12 UR - https://doi.org/3.0.CO;2-I DO - 3.0.CO;2-I ID - Rogan1998 ER - TY - JOUR AU - Hurwitz, I. AU - Svojanovsky, S. AU - Leeder, J. S. AU - Rogan, P. K. PY - 2001 DA - 2001// TI - Modeling differential binding of NF-kB p50 to a CYP2D6 promotor variant by information theory [abstract] JO - American Journal of Human Genetics VL - 69 ID - Hurwitz2001 ER - TY - JOUR AU - Rogan, P. K. AU - Svojanovsky, S. AU - Hurwitz, I. AU - Schneider, T. D. AU - Leeder, J. S. PY - 2002 DA - 2002// TI - Modeling splice site and transcription factor binding site variation by information theory [abstract] JO - American Journal of Human Genetics VL - 71 ID - Rogan2002 ER - TY - CHAP AU - Vyhlidal, C. A. AU - Rogan, P. K. AU - Leeder, J. S. PY - 2002 DA - 2002// TI - Modeling PXR/RXR Binding Using Information Theory [abstract] BT - 7th Annual Meeting of the International Society for Study of Xenobiotics ID - Vyhlidal2002 ER - TY - JOUR AU - Shultzaberger, R. K. AU - Bucheimer, R. E. AU - Rudd, K. E. AU - Schneider, T. D. PY - 2001 DA - 2001// TI - Anatomy of Escherichia coli ribosome binding sites JO - J Mol Biol VL - 313 UR - https://doi.org/10.1006/jmbi.2001.5040 DO - 10.1006/jmbi.2001.5040 ID - Shultzaberger2001 ER - TY - JOUR AU - Rogan, P. K. AU - Svojanovsky, S. AU - Leeder, J. S. PY - 2003 DA - 2003// TI - Information theory-based analysis of CYP2C19, CYP2D6 and CYP3A5 splicing mutations JO - Pharmacogenetics VL - 13 UR - https://doi.org/10.1097/00008571-200304000-00005 DO - 10.1097/00008571-200304000-00005 ID - Rogan2003 ER - TY - JOUR AU - Hengen, P. N. AU - Bartram, S. L. AU - Stewart, L. E. AU - Schneider, T. D. PY - 1997 DA - 1997// TI - Information analysis of Fis binding sites JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.24.4994 DO - 10.1093/nar/25.24.4994 ID - Hengen1997 ER - TY - JOUR AU - Zheng, M. AU - Doan, B. AU - Schneider, T. D. AU - Storz, G. PY - 1999 DA - 1999// TI - OxyR and SoxRS regulation of fur JO - J Bacteriol VL - 181 ID - Zheng1999 ER - TY - JOUR AU - Berman, B. P. AU - Nibu, Y. AU - Pfeiffer, B. D. AU - Tomancak, P. AU - Celniker, S. E. AU - Levine, M. AU - Rubin, G. M. AU - Eisen, M. B. PY - 2002 DA - 2002// TI - Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome JO - Proc Natl Acad Sci U S A VL - 99 UR - https://doi.org/10.1073/pnas.231608898 DO - 10.1073/pnas.231608898 ID - Berman2002 ER - TY - JOUR AU - Rebeiz, M. AU - Reeves, N. L. AU - Posakony, J. W. PY - 2002 DA - 2002// TI - SCORE: a computational approach to the identification of cis-regulatory modules and target genes in whole-genome sequence data. Site clustering over random expectation JO - Proc Natl Acad Sci U S A VL - 99 UR - https://doi.org/10.1073/pnas.152320899 DO - 10.1073/pnas.152320899 ID - Rebeiz2002 ER - TY - JOUR AU - Lund, M. AU - Tange, T. O. AU - Dyhr-Mikkelsen, H. AU - Hansen, J. AU - Kjems, J. PY - 2000 DA - 2000// TI - Characterization of human RNA splice signals by iterative functional selection of splice sites JO - RNA VL - 6 UR - https://doi.org/10.1017/S1355838200992033 DO - 10.1017/S1355838200992033 ID - Lund2000 ER - TY - JOUR AU - Shultzaberger, R. K. AU - Schneider, T. D. PY - 1999 DA - 1999// TI - Using sequence logos and information analysis of Lrp DNA binding sites to investigate discrepanciesbetween natural selection and SELEX JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.3.882 DO - 10.1093/nar/27.3.882 ID - Shultzaberger1999 ER - TY - CHAP AU - Schneider, T. D. PY - 2003 DA - 2003// TI - Delila programs documentation. BT - http://www.lecb.ncifcrf.gov/~toms/delila/delilaprograms.html ID - Schneider2003 ER - TY - JOUR AU - Stephens, R. M. AU - Schneider, T. D. PY - 1992 DA - 1992// TI - Features of spliceosome evolution and function inferred from an analysis of the information at human splice sites JO - J Mol Biol VL - 228 UR - https://doi.org/10.1016/0022-2836(92)90320-J DO - 10.1016/0022-2836(92)90320-J ID - Stephens1992 ER - TY - JOUR AU - Schneider, T. D. PY - 1999 DA - 1999// TI - Measuring molecular information JO - J Theor Biol VL - 201 UR - https://doi.org/10.1006/jtbi.1999.1012 DO - 10.1006/jtbi.1999.1012 ID - Schneider1999 ER - TY - JOUR AU - Gerhold, D. AU - Lu, M. AU - Xu, J. AU - Austin, C. AU - Caskey, C. T. AU - Rushmore, T. PY - 2001 DA - 2001// TI - Monitoring expression of genes involved in drug metabolism and toxicology using DNA microarrays JO - Physiol Genomics VL - 5 ID - Gerhold2001 ER - TY - JOUR AU - Rae, J. M. AU - Johnson, M. D. AU - Lippman, M. E. AU - Flockhart, D. A. PY - 2001 DA - 2001// TI - Rifampin is a selective, pleiotropic inducer of drug metabolism genes in human hepatocytes: studies with cDNA and oligonucleotide expression arrays JO - J Pharmacol Exp Ther VL - 299 ID - Rae2001 ER -