cDNA2Genome: A tool for mapping and annotating cDNAs

BMC Bioinformatics

Table 1 Databases used in cDNA2genome

Database type	Database
Genomic	Human genomic sequence contig assembly database ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens
	Mouse genomic sequence contig assembly database ftp://ftp.ncbi.nlm.nih.gov/genomes/M_musculus
Proteins	Swissprot + Trembl + updates ftp://ftp.expasy.org/databases/sp_tr_nrdb/ftp://ftp.ebi.ac.uk/pub/databases/swissprot
mRNA	Human mRNA database ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/RNA
Sequences representing a unique gene	Unigene ftp://ftp.ncbi.nih.gov/repository/UniGene/
Curated sequences and descriptive information about genetic loci	LocusLink http://www.ncbi.nlm.nih.gov/LocusLink
Expressed Sequence Tags (ESTs)	ESTs EMBL+ ESTs Genbank +updates ftp://ftp.ebi.ac.uk/pub/databases/embl ftp://ftp.ncbi.nih.gov/genbank/

ISSN: 1471-2105