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Table 1 RNA virus in current study.

From: Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling

   Virus Name Type Acession Number DNA Stage Segment Acronym Size (nt) G A U C A+U%
ssRNA positive-strand viruses 1 Avian infectious bronchitis virus ss-RNA NC_001451 No 1 ABV 27608 21.7 28.9 33.2 16.2 62.1
  2 Bovine coronavirus ss-RNA NC_003045 No 1 BCoV 31028 21.8 27.4 35.5 15.3 62.9
  3 Equine arteritis virus ss-RNA NC_002532 No 1 EV1 12704 26.0 21.2 27.1 25.6 48.3
  4 Human coronavirus 229E ss-RNA NC_002645 No 1 HCoV 27317 21.6 27.2 34.6 16.7 61.7
  5 Lactate dehydrogenase-elevating virus ss-RNA NC_002534 No 1 LDV 14225 25.9 23.1 28.2 22.6 51.3
  6 Murine hepatitis virus ss-RNA NC_001846 No 1 MHV 31357 23.9 26.0 32.3 17.9 58.2
  7 Porcine epidemic diarrhea virus ss-RNA NC_003436 No 1 PDV 28033 22.8 24.7 33.2 19.2 58.0
  8 Porcine reproductive and respiratory syndrome virus ss-RNA NC_001961 No 1 PRV 15428 26.2 21.7 25.3 26.7 47.0
  9 SARS coronavirus ss-RNA NC_004718 No 1 SAR 29751 20.8 28.5 30.7 20.0 59.2
  10 Feline coronavirus ss-RNA AY204704 No 1 FCoV 9979 22.6 27.9 29.2 20.3 57.2
  11 Simian hemorrhagic fever virus ss-RNA NC_003092 No 1 SFV 15717 22.6 22.5 27.4 27.5 49.9
  12 Transmissible gastroenteritis virus ss-RNA NC_002306 No 1 TGV 28586 20.6 29.5 32.9 17.0 62.4
  13 Avian encephalomyelitis virus ss-RNA NC_003990 No 1 AEV 7055 25.7 27.0 28.3 19.0 55.3
  14 Bovine viral diarrhea virus genotype 2 ss-RNA NC_002032 No 1 BDV 12255 25.2 32.7 22.3 19.8 54.9
  15 Foot-and-mouth disease virus C ss-RNA NC_002554 No 1 FMV 8115 25.6 24.8 21.2 28.5 45.9
  16 Igbo Ora virus ss-RNA NC_001924 No 1 IOV 11821 24.1 31.1 20.9 24.0 51.9
  17 Poliovirus ss-RNA NC_002058 No 1 PV1 7440 23.0 29.7 24.0 23.3 53.7
  18 Rabbit hemorrhagic disease virus ss-RNA NC_001543 No 1 RHV 7437 25.5 25.9 23.9 24.7 49.8
  19 Tamana bat virus ss-RNA NC_003996 No 1 TBV 10053 21.5 33.2 28.3 16.9 61.6
  20 Yellow fever virus ss-RNA NC_002031 No 1 YFV 10862 0.28 0.27 0.23 0.21 0.50
ssRNA negative-strand viruses 21 Avian paramyxovirus 6 ss-RNA NC_003043 No 1 APV 16236 0.23 0.29 0.25 0.23 0.54
  22 Bovine ephemeral fever virus ss-RNA NC_002526 No 1 BFV 14900 0.20 0.38 0.28 0.14 0.66
  23 Bovine respiratory syncytial virus ss-RNA NC_001989 No 1 BRV 15140 0.17 0.38 0.29 0.17 0.66
  24 Canine distemper virus ss-RNA NC_001921 No 1 CDV 15690 0.22 0.31 0.26 0.21 0.57
  25 Human respiratory syncytial virus ss-RNA NC_001781 No 1 HRV 15225 0.16 0.39 0.28 0.18 0.67
  26 Hantaan virus ss-RNA AF345636 Yes 2 HV1 11772 0.21 0.33 0.29 0.17 0.62
  27 Influenza B virus ss-RNA NC_002208 Yes 8 IBV 14452 0.22 0.36 0.24 0.18 0.60
  28 Measles virus ss-RNA NC_001498 No 1 MV1 15894 0.24 0.29 0.23 0.24 0.53
  29 Respiratory syncytial virus ss-RNA NC_001803 No 1 RSV 15191 0.16 0.39 0.28 0.18 0.67
  30 Reston Ebola virus ss-RNA NC_004161 No 1 REV 18891 0.20 0.31 0.28 0.21 0.59
  31 Tioman virus ss-RNA NC_004074 No 1 TV2 15522 0.21 0.30 0.26 0.22 0.57
  1. The information about 31 RNA viruses being investigated in this study. Their accession number, abbreviation, genome size, number of segments and whether they undergo DNA stage are tabulated. The breakdown of the RNA nucleic acids and A+U contents are also shown.