Table 1 RNA virus in current study.
From: Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling
Virus Name | Type | Acession Number | DNA Stage | Segment | Acronym | Size (nt) | G | A | U | C | A+U% | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ssRNA positive-strand viruses | 1 | Avian infectious bronchitis virus | ss-RNA | NC_001451 | No | 1 | ABV | 27608 | 21.7 | 28.9 | 33.2 | 16.2 | 62.1 |
2 | Bovine coronavirus | ss-RNA | NC_003045 | No | 1 | BCoV | 31028 | 21.8 | 27.4 | 35.5 | 15.3 | 62.9 | |
3 | Equine arteritis virus | ss-RNA | NC_002532 | No | 1 | EV1 | 12704 | 26.0 | 21.2 | 27.1 | 25.6 | 48.3 | |
4 | Human coronavirus 229E | ss-RNA | NC_002645 | No | 1 | HCoV | 27317 | 21.6 | 27.2 | 34.6 | 16.7 | 61.7 | |
5 | Lactate dehydrogenase-elevating virus | ss-RNA | NC_002534 | No | 1 | LDV | 14225 | 25.9 | 23.1 | 28.2 | 22.6 | 51.3 | |
6 | Murine hepatitis virus | ss-RNA | NC_001846 | No | 1 | MHV | 31357 | 23.9 | 26.0 | 32.3 | 17.9 | 58.2 | |
7 | Porcine epidemic diarrhea virus | ss-RNA | NC_003436 | No | 1 | PDV | 28033 | 22.8 | 24.7 | 33.2 | 19.2 | 58.0 | |
8 | Porcine reproductive and respiratory syndrome virus | ss-RNA | NC_001961 | No | 1 | PRV | 15428 | 26.2 | 21.7 | 25.3 | 26.7 | 47.0 | |
9 | SARS coronavirus | ss-RNA | NC_004718 | No | 1 | SAR | 29751 | 20.8 | 28.5 | 30.7 | 20.0 | 59.2 | |
10 | Feline coronavirus | ss-RNA | AY204704 | No | 1 | FCoV | 9979 | 22.6 | 27.9 | 29.2 | 20.3 | 57.2 | |
11 | Simian hemorrhagic fever virus | ss-RNA | NC_003092 | No | 1 | SFV | 15717 | 22.6 | 22.5 | 27.4 | 27.5 | 49.9 | |
12 | Transmissible gastroenteritis virus | ss-RNA | NC_002306 | No | 1 | TGV | 28586 | 20.6 | 29.5 | 32.9 | 17.0 | 62.4 | |
13 | Avian encephalomyelitis virus | ss-RNA | NC_003990 | No | 1 | AEV | 7055 | 25.7 | 27.0 | 28.3 | 19.0 | 55.3 | |
14 | Bovine viral diarrhea virus genotype 2 | ss-RNA | NC_002032 | No | 1 | BDV | 12255 | 25.2 | 32.7 | 22.3 | 19.8 | 54.9 | |
15 | Foot-and-mouth disease virus C | ss-RNA | NC_002554 | No | 1 | FMV | 8115 | 25.6 | 24.8 | 21.2 | 28.5 | 45.9 | |
16 | Igbo Ora virus | ss-RNA | NC_001924 | No | 1 | IOV | 11821 | 24.1 | 31.1 | 20.9 | 24.0 | 51.9 | |
17 | Poliovirus | ss-RNA | NC_002058 | No | 1 | PV1 | 7440 | 23.0 | 29.7 | 24.0 | 23.3 | 53.7 | |
18 | Rabbit hemorrhagic disease virus | ss-RNA | NC_001543 | No | 1 | RHV | 7437 | 25.5 | 25.9 | 23.9 | 24.7 | 49.8 | |
19 | Tamana bat virus | ss-RNA | NC_003996 | No | 1 | TBV | 10053 | 21.5 | 33.2 | 28.3 | 16.9 | 61.6 | |
20 | Yellow fever virus | ss-RNA | NC_002031 | No | 1 | YFV | 10862 | 0.28 | 0.27 | 0.23 | 0.21 | 0.50 | |
ssRNA negative-strand viruses | 21 | Avian paramyxovirus 6 | ss-RNA | NC_003043 | No | 1 | APV | 16236 | 0.23 | 0.29 | 0.25 | 0.23 | 0.54 |
22 | Bovine ephemeral fever virus | ss-RNA | NC_002526 | No | 1 | BFV | 14900 | 0.20 | 0.38 | 0.28 | 0.14 | 0.66 | |
23 | Bovine respiratory syncytial virus | ss-RNA | NC_001989 | No | 1 | BRV | 15140 | 0.17 | 0.38 | 0.29 | 0.17 | 0.66 | |
24 | Canine distemper virus | ss-RNA | NC_001921 | No | 1 | CDV | 15690 | 0.22 | 0.31 | 0.26 | 0.21 | 0.57 | |
25 | Human respiratory syncytial virus | ss-RNA | NC_001781 | No | 1 | HRV | 15225 | 0.16 | 0.39 | 0.28 | 0.18 | 0.67 | |
26 | Hantaan virus | ss-RNA | AF345636 | Yes | 2 | HV1 | 11772 | 0.21 | 0.33 | 0.29 | 0.17 | 0.62 | |
27 | Influenza B virus | ss-RNA | NC_002208 | Yes | 8 | IBV | 14452 | 0.22 | 0.36 | 0.24 | 0.18 | 0.60 | |
28 | Measles virus | ss-RNA | NC_001498 | No | 1 | MV1 | 15894 | 0.24 | 0.29 | 0.23 | 0.24 | 0.53 | |
29 | Respiratory syncytial virus | ss-RNA | NC_001803 | No | 1 | RSV | 15191 | 0.16 | 0.39 | 0.28 | 0.18 | 0.67 | |
30 | Reston Ebola virus | ss-RNA | NC_004161 | No | 1 | REV | 18891 | 0.20 | 0.31 | 0.28 | 0.21 | 0.59 | |
31 | Tioman virus | ss-RNA | NC_004074 | No | 1 | TV2 | 15522 | 0.21 | 0.30 | 0.26 | 0.22 | 0.57 |