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Table 3 Codon usage for Human CoronaVirus 229E (HCoV).

From: Relationship of SARS-CoV to other pathogenic RNA viruses explored by tetranucleotide usage profiling

Amino Acid

Codon

Usage/%

Amino Acid

Codon

Usage/%

Arg

CGU

1.04

Ile

AUU

3.34

 

CGC

0.41

 

AUC

0.74

 

CGA

0.17

 

AUA

1.35

 

CGG

0.13

Gly

GGU

4.12

 

AGA

1.23

 

GGC

1.43

 

AGG

0.36

 

GGA

0.67

Leu

UUA

1.49

 

GGG

0.22

 

UUG

2.96

Val

GUU

6.00

 

CUU

2.48

 

GUC

1.23

 

CUC

0.46

 

GUA

1.09

 

CUA

0.65

 

GUG

1.90

 

CUG

0.63

Lys

AAA

3.15

Ser

UCU

2.70

 

AAG

2.31

 

UCC

0.66

Asn

AAU

4.15

 

UCA

1.37

 

AAC

1.82

 

UCG

0.20

Gln

CAA

2.04

 

AGU

1.86

 

CAG

1.17

 

AGC

0.71

his

CAU

1.14

Thr

ACU

3.23

 

CAC

0.46

 

ACC

0.76

Glu

GAA

2.81

 

ACA

2.21

 

GAG

1.21

 

ACG

0.29

Asp

GAU

3.09

Pro

CCU

1.6S

 

GAC

1.96

 

CCC

0.35

Tyr

UAU

3.00

 

CCA

1.07

 

UAC

1.46

 

CCG

0.19

Cys

UGU

2.26

Ala

GCU

3.58

 

UGC

0.95

 

GCC

0.83

Phe

UUU

4.59

 

GCA

1.80

 

UUC

1.10

 

GCG

0.42

   
  1. The relative usage of synonymous codons in the 24 known CDSs of Human Corona Virus 229E (HCoV).