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Table 11 Difference in average performance of methods on the Master data set. A positive value indicates that the row method gives a higher accuracy than the column method. Significant differences as calculated by the Wilcoxon Signed Rank Pair test are marked: †p < 0.05; ‡p < 0.01; § p < 0.001.

From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy

  AMPS CLUSTALW PILEUP PRRP
AMPS     
CLUSTALW -0.73    
PILEUP -0.98§ -0.25   
PRRP -1.50§ -0.77§ -0.52  
PIMA -1.73§ -1.00§ -0.75 -0.23