Table 12 The performance of methods on the MSA data set (families with ≤ 8 members.)
From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
| Methods | Percentage Identity Range | Overall | ||||
|---|---|---|---|---|---|---|
| 0–10 | 10–20 | 20–30 | 30–50 | 50–100 | ||
| AMPS | 22.2 | 62.2 | 81.5 | 91.3 | 99.0 | 89.68 |
| CLUSTALW | 21.4 | 57.0 | 79.3 | 91.2 | 99.0 | 88.94 |
| PILEUP | 25.9 | 59.5 | 78.4 | 90.2 | 99.0 | 89.00 |
| PRRP | 20.6 | 58.2 | 78.6 | 89.7 | 98.1 | 88.14 |
| PIMA | 17.4 | 56.6 | 78.7 | 90.1 | 99.0 | 88.46 |
| DIALIGN | 13.5 | 44.4 | 68.3 | 81.9 | 96.3 | 82.91 |
| MSA | 18.3 | 55.2 | 79.4 | 90.3 | 98.5 | 88.24 |
| T COFFEE | 23.1 | 69.0 | 87.2 | 93.3 | 99.2 | 91.39 |
| N. Family | 21 | 49 | 53 | 142 | 317 | 582 |