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Table 12 The performance of methods on the MSA data set (families with ≤ 8 members.)

From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy

Methods Percentage Identity Range Overall
  0–10 10–20 20–30 30–50 50–100  
AMPS 22.2 62.2 81.5 91.3 99.0 89.68
CLUSTALW 21.4 57.0 79.3 91.2 99.0 88.94
PILEUP 25.9 59.5 78.4 90.2 99.0 89.00
PRRP 20.6 58.2 78.6 89.7 98.1 88.14
PIMA 17.4 56.6 78.7 90.1 99.0 88.46
DIALIGN 13.5 44.4 68.3 81.9 96.3 82.91
MSA 18.3 55.2 79.4 90.3 98.5 88.24
T COFFEE 23.1 69.0 87.2 93.3 99.2 91.39
N. Family 21 49 53 142 317 582