Table 14 Performance of methods on pairwise alignments.
From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
Methods | Percentage Identity Range | Overall | ||||
|---|---|---|---|---|---|---|
|  | 0–10 | 10–20 | 20–30 | 30–50 | 50–100 |  |
AMPS | 20.7 | 62.3 | 89.8 | 95.4 | 99.5 | 88.97 |
CLUSTALW | 19.9 | 58.8 | 88.9 | 96.1 | 99.6 | 88.54 |
PILEUP | 24.3 | 61.7 | 90.0 | 94.5 | 99.6 | 89.01 |
PRRP | 17.3 | 58.3 | 85.2 | 93.0 | 99.1 | 87.22 |
PIMA | 15.9 | 58.5 | 89.9 | 94.5 | 99.6 | 88.12 |
DIALIGN | 14.2 | 43.6 | 75.4 | 88.8 | 97.6 | 82.86 |
MSA | 17.4 | 55.1 | 89.2 | 94.5 | 99.2 | 87.48 |
T COFFEE | 15.4 | 67.6 | 93.6 | 96.5 | 99.6 | 89.90 |
N. Family | 15 | 35 | 22 | 45 | 156 | 273 |