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Table 14 Performance of methods on pairwise alignments.

From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy

Methods Percentage Identity Range Overall
  0–10 10–20 20–30 30–50 50–100  
AMPS 20.7 62.3 89.8 95.4 99.5 88.97
CLUSTALW 19.9 58.8 88.9 96.1 99.6 88.54
PILEUP 24.3 61.7 90.0 94.5 99.6 89.01
PRRP 17.3 58.3 85.2 93.0 99.1 87.22
PIMA 15.9 58.5 89.9 94.5 99.6 88.12
DIALIGN 14.2 43.6 75.4 88.8 97.6 82.86
MSA 17.4 55.1 89.2 94.5 99.2 87.48
T COFFEE 15.4 67.6 93.6 96.5 99.6 89.90
N. Family 15 35 22 45 156 273