Table 15 Performance of methods on families of the full-length sequence data set. Only AMPS, CLUSTALW and PRRP were able to align all families in this set.
From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy
Methods | Percentage Identity Range | Overall | ||||
|---|---|---|---|---|---|---|
|  | 0–10 | 10–20 | 20–30 | 30–50 | 50–100 |  |
AMPS | 4.1 | 33.8 | 70.9 | 83.7 | 97.8 | 80.33 |
CLUSTALW | 5.3 | 36.0 | 70.2 | 84.5 | 97.6 | 80.65 |
PILEUP | 7.7 | 36.2 | 69.9 | 83.1 | 97.9 | 80.45 |
PRRP | 8.3 | 27.6 | 64.6 | 81.3 | 96.2 | 77.63 |
PIMA | 4.8 | 34.4 | 68.5 | 84.2 | 97.8 | 80.28 |
N. Family | 23 | 62 | 71 | 179 | 269 | 604 |