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Table 15 Performance of methods on families of the full-length sequence data set. Only AMPS, CLUSTALW and PRRP were able to align all families in this set.

From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy

Methods Percentage Identity Range Overall
  0–10 10–20 20–30 30–50 50–100  
AMPS 4.1 33.8 70.9 83.7 97.8 80.33
CLUSTALW 5.3 36.0 70.2 84.5 97.6 80.65
PILEUP 7.7 36.2 69.9 83.1 97.9 80.45
PRRP 8.3 27.6 64.6 81.3 96.2 77.63
PIMA 4.8 34.4 68.5 84.2 97.8 80.28
N. Family 23 62 71 179 269 604