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Table 9 The performance of AMPS on the Master data set of domain families and on full-length sequences that include the domains. Parameters and column labels as in Table 7.

From: OXBench: A benchmark for evaluation of protein multiple sequence alignment accuracy

PID Average 1 Number of Families 2 Acc SCR (Domain Families) 3 Acc SCR (Full-length) 4 Difference in Accuracy (3–4) p
0–10 22 21.1 4.2 16.9 0.000482
10–20 62 55.8 33.3 22.5 2.65e-08
20–30 70 82.6 71.2 11.4 0.000189
30–50 182 92.0 83.9 8.1 2.17e-ll
50–100 269 98.2 97.9 0.3 0.466
Total 605 87.4 80.6 6.8 <2.2e-16