LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles

Table 1 LEA Protein Group 1 (D19) Exemplar(s): LE19_GOSHI

ID	Species	Tissue	Expression	Pep	SF	Evidence
EM1_ARATH	ARATH	Seed	ABA, Canon		4	PF00477_hmm; L194_HORVU (1e-67)
EM1_WHEAT	WHEAT	Seed	ABA, Canon	1(1)	6	PF00477_ma
EM2_WHEAT	WHEAT	Seed	ABA, Canon	1(1)	6	PF00477_hmm, EMP1_ORYSA (2e-41)
EM6_ARATH	ARATH	Seed	ABA, Canon	1(1)	6	PF00477_ma; EMB1_DAUCA (9e-38)
EMB1_DAUCA	DAUCA	Seed	Canon	1(1)	4	PF00477_hmm
EMB5_MAIZE	MAIZE	Seed	ABA, Canon	1(1)	6	PF00477_hmm
EMP1_ORYSA	ORYSA	Seed	ABA, Canon	1(1)	6	PF00477_hmm
L193_HORVU	HORVU	Seed	ABA, notCold, Canon, Mannitol	1(3)	4	PF00477_hmm
L194_HORVU	HORVU	Seed	ABA, notCold Canon, Mannitol	1(4)	4	PF00477_hmm
L19A_HORVU	HORVU	Seed	ABA, notCold, Canon Mannitol, Salt	1(1)	6	PF00477_hmm
L19B_HORVU	HORVU	Seed	ABA, notCold, Canon, Mannitol, Salt	1(1)	6	PF00477_hmm
LE10_HELAN	HELAN	Seed	ABA, Canon, Mannitol		4	PF00477_hmm
LE19_GOSHI	GOSHI	Seed	ABA, Canon		4	PF00477_ma
SEEP_RAPSA	RAPSA	Seed	Canon	1(1)	3,6 (280)	PF00477_hmm PF00477_hmm

LEA Group 1 proteins, with the exemplar being LE19_GOSHI. The columns are: 1) the protein identifier, 2) a code for the species (see Table 10), 3) the tissue(s) in which it has been found, 4) the conditions that give rise (or fail to give rise) to the expression of the gene, 5) whether the LEA Group 1 motif is detected using agrep and the number of times it is found, 6) the superfamilies/stand-alone clusters in which the protein is found and 7) other evidence for accepting the protein as LEA Group 1.

ISSN: 1471-2105