Skip to main content

Table 2 LEA Protein Group 2 (D11) Exemplar(s): DH11_GOSHI

From: LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles

ID

Species

Tissue

Expression

Pep

SF

Evidence

DH11_GOSHI

GOSHI

Seed

ABA, Canon

2Y(2), 2S(9), k(4)

1

PF00257_ma

DH14_LYCES

LYCES

Root, Stem Leaf

ABA, Salt notCold

2Y(1), 2K(1), 2S(5)

1

PF00257_ma; DH1B_ORYSA (5e-17)

DH15_WHEAT

WHEAT

Root

ABA, Desc

2Y(1), 2K(2) 2S(8)

1

PF00257_ma; DH1B_ORYSA (1e-37)

DH18_ARATH

ARATH

Leaf Stem

ABA, Desc notCold

2Y(2), 2K(2) 2S(5)

1,3

PF00257_ma EC40_DAUCA (3e-25)

DH1B_ORYSA

ORYSA

Seed, Shoot

ABA, Canon, Salt

2Y(2), 2K(2), 2S(8)

1,10

PF00257_ma

DH1C_ORYSA

ORYSA

Seed, Shoot

ABA, Canon, Salt

2Y(2), 2K(2), 2S(8)

1,10

PF00257_hmm

DH1_MAIZE

MAIZE

Shoot

ABA, Desc

2Y(1), 2K(2) 2S(7)

1

PF00257_ma DH1B_ORYSA (4e-47)

DH25_ORYSA

ORYSA

Callus

ABA, Desc notCold

2Y(2), 2K(2), 2S(9), k(3)

1,8

PF00257_ma DHLE_RAPSA (2e-26)

DHA_CRAPL

CRAPL

Leaf

ABA, Desc

2K(1), 2S(7)

10

PF00257_ma; DHLE_RAPSA (8e-20)

DHB_CRAPL

CRAPL

Leaf

ABA, Desc

2Y(1), 2K(2) 2S(8)

1

PF00257_ma; DH1B_ORYSA

DHLE_RAPSA

RAPSA

Seed

Canon

2Y(3), 2K(1) 2S(7)

1

PF00257_ma

DHN1_PEA

PEA

Shoot Cotyledon

ABA, Desc notCanon

2Y(3), 2K(2)

1

PF00257_ma DH1B_ORYSA (1e-17)

EC40_DAUCA

DAUCA

Seed, Embryo cells

ABA, Canon

2Y(3), 2K(1) 2S(6)

1

PF00257_hmm;

O22623

VACCO

Floral buds, Leaf

Cold

None

1,3

DH1B_ORYSA (1e-5)

O65216

WHEAT

Leaf, Root Crown, Seed

ABA, Cold, Desc

2K(6)

1,3

PF00257_hmm; DH1B_ORYSA (8e-18)

P93701

VIGUN

Leaf

ABA, notCold Desc, Salt

2Y(2), 2K(1)

1

PF00257_hmm; EC40_DAUCA (6e-23)

Q39937

HELAN

Leaf

ABA, Desc

2Y(3), 2K(1), 2S(7)

1

PF00257_hmm; EC40_DAUCA (1e-38),

Q39938

HELAN

Leaf

ABA, Desc

2K(2), 2S(5), k(3)

1

PF00257_hmm; DH1B_ORYSA (6e-21)

Q40331

MEDFA

Callus

notABA, Cold, notDesc

2K(1)

1

PF00257_hmm; DH1C_ORYSA (1e-7)

Q40968

PRUPE

Bark

Cold, Desc

2Y(2), 2K(4)

1

PF00257_hmm; EC40_DAUCA(3e-13)

Q41306

SOLCO

Leaf, Stem

ABA, Cold

2Y(2), 2K(2), 2S(7), k(3)

1

PF00257_hmm; DHLE_RAPSA (9e-29)

Q41451

SOLTU

Leaf, Stem

ABA, Cold

2Y(2), 2K(2), 2S(7), k(3)

1

PF00257_hmm; DHLE_RAPSA (2e-29)

Q9SBI7

HORVU

Seedling

Desc, ABA, Cold

2K(9)

1,3 (295)

PF00257_hmm; DH1B_ORYSA (5e-16)

Q9SPL8

VIGUN

Seed

Cold

2Y(2), 2K(1)

1

PF00257_hmm; EC40_DAUCA (1.8e-25)

Q9ZTR2

HORVU

Seedling

Desc, notABA notCold

2Y(2), 2K(3), 2S(9)

1

PF00257_hmm; DH1C_ORYSA (4e-33)

Q9ZTR3

HORVU

Seedling

Desc, ABA notCold

2Y(1), 2K(2), 2S(8)

1

PF00257_hmm; DH1B_ORYSA (2e-44)

Q9ZTR4

HORVU

Seedling

Desc, ABA, notCold

2Y(1), 2K(2), 2S(7)

1

PF00257_hmm; DH1C_ORYSA (1e-47)

Q9ZTR5

HORVU

Seedling

Desc, ABA, notCold

2Y(2), 2K(3), 2S(9)

1,9

PF00257_hmm; EC40_DAUCA (1e-43)

COR4_WHEAT

WHEAT

Root, Leaf Crown

ABA, Cold Desc

2K(1), 2S(9), k(7)

3

PF00257_ma, EC40_DAUCA (1e-7)

CS12_WHEAT

WHEAT

Shoot

Cold, notABA notDesc

2K(6)

1,3

PF00257_ma, EC40_DAUCA (8e-17)

CS66_WHEAT

WHEAT

Shoot

Cold, notABA notDesc

2K(5)

1,3

PF00257_hmm, DH1B_ORYSA (6e-17)

DH14_ARATH

ARATH

Leaf, Stem, Root, Seed, Flower

ABA, Desc notCanon Cold

2K(2), 2S(7), k(10)

3

PF00257_ma; EC40_DAUCA (2e-10)

DH1D_ORYSA

ORYSA

Seed Shoot

ABA Salt

2Y(1), 2K(2), 2S(4)

1

PF00257_ma; DH1B_ORYSA (9e-43)

DH1_HORVU

HORVU

Shoot

ABA, Desc Desc

2Y(1), 2K(2), 2S(7)

1

PF00257_ma; DH1B_ORYSA (2e-35)

DH21_ORYSA

ORYSA

Seed

ABA, Desc

2Y(1), 2K(2), 2S(7)

1

PF00257_hmm; DH1B_ORYSA (3e-50)

DH2_HORVU

HORVU

Shoot

ABA, Desc

2Y(1), 2K(2), 2S(7)

1

PF00257_hmm; DH1C_ORYSA (4e-35)

DH3_HORVU

HORVU

Shoot

ABA, Desc

2Y(1), 2K(2), 2S(7)

1

PF00257_ma; DH1C_ORYSA (7e-45)

DH4_HORVU

HORVU

Shoot

ABA, Desc

2Y(1), 2K(2), 2S(7)

1

PF00257_hmm; DH1C_ORYSA (2e-38)

DH47_ARATH

ARATH

Leaf, Stem Seed

ABA, Cold, Desc, notCanon

2K(3), 2S(7), k(4)

3

PF00257_hmm DHLE_RAPSA (2e-12)

DHX2_ARATH

ARATH

Leaf, Stem

Cold, weak ABA weak Desc

2K(3)

1

PF00257_hmm

O64939

LOPEL

Root

Salt

2K(6)

1,3,9

PF00257_hmm; DH1B_ORYSA (7e-16)

Q41347

STELP

Leaf

ABA, Desc, PEG

2K(1), 2S(5), 2S(6), k(3)

8

PF00257_hmm; DHLE_RAPSA (4e-8)

Q42409

TRITU

Root, Shoot

ABA, Desc

2K(2)

1

PF00257_hmm; DH1C_ORYSA (6e-16)

Q43488

HORVU

Leaf

notABA, Cold Desc

2K(1), 2S(9), k(10)

3

PF00257_hmm; DH1B_ORYSA (4e-9)

DH10_ARATH

ARATH

Leaf, Stem, Root, Seeds Flower

weak ABA, weak Desc, notCanon Cold

2K(2), 2S(7), k(11)

3

PF00257_ma EC40_DAUCA (4e-9)

O04232

SOLTU

Tuber

Cold

2K(2), 2S(9), k(9)

3

PF00257_hmm; DH1C_ORYSA (3e-11)

O48622

SPIOL

Shoot

Cold, Desc

2K(4), k(3)

3, (280)

EC40_DAUCA (1e-6)

Q41091

PONTR

Leaf Leaf

Cold, notSalt notDesc

2S(5), k(8)

3

DH1C_ORYSA (1e-8)

Q9XEL3

PICGL

Bud, Stem

ABA, Cold, Desc

2K(3), 2S(8), k(12)

3

PF00257_hmm; DH1C_ORYSA (2e-11)

Q9ZR21

CITUN

Leaf

Cold

2S(5), k(9)

3

DH1C_ORYSA (1e-9)

  1. LEA Group 2 proteins, with the exemplar being DH11_GOSH. The columns are: 1) the protein identifier, 2) a code for the species (see Table 10), 3) the tissue(s) in which it has been found, 4) the conditions that give rise (or fail to give rise) to the expression of the gene, 5) whether any of the Close LEA Group 2 motifs 2Y, 2K or 2S, or poly-lysine stutters are detected using agrep and the number of times each is found, 6) the superfamilies/stand-alone clusters in which the protein is found and 7) other evidence for accepting the protein as LEA Group 2.
Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us