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Table 3 LEA Protein Group 3 (D7) Exemplar(s): LE7_GOSHI, LE76_BRANA

From: LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles

ID

Species

Tissue

Expression

Pep

SF

Evidence

DRPF_CRAPL

CRAPL

Leaf

ABA, Desc

3(1), k(3)

2

PF02987_ma; LE76_BRANA (3e-12)

EDC8_DAUCA

DAUCA

Seed

ABA, Canon

3(5)

2

PF02987_ma

LE76_BRANA

BRANA

Seed

ABA, Canon

3(5)

5

PF02987_ma

LE7_GOSHI

GOSHI

Seed

ABA, Canon

3(2)

2

PF02987_ma

LEA1_HORVU

HORVU

Aleurone

ABA, Cold, Desc Canon, Salt

3(7)

2

PF02987_ma

LEA3_MAIZE

MAIZE

Seed, Leaf Shoot

ABA, Desc, Canon

3(4)

2

PF02987_ma

LEA3_WHEAT

WHEAT

Shoot

ABA, Desc

3(7)

2

PF02987_hmm; LEA1_HORVU (1e-100)

LED3_DAUCA

DAUCA

Seed

Canon

3(4)

2

LE7_GOSHI (3e-27)

O49816

CICAR

Mesocotyl

notABA, notCold, Desc, Salt

3(5)

5

PF02987_ma; LE76_BRANA (1e-46)

O49817

CICAR

Mesocotyl

notABA, notCold Desc, Salt

3(4)

5

PF02987_ma; LE76_BRANA (5e-36)

Q03967

WHEAT

Shoot

Desc, Canon

 

2

PF02987_ma

Q06540

WHEAT

Shoot

Cold, notABA notDesc, notSalt

2S(3)

2

Q39660 (6e-8) DRPF_CRAPL (5e-5)

Q39058

ARATH

Shoot

ABA, Cold, notDesc

 

2

Q39873 (7e-8)

Q39660

CHLVU

Whole cells

Cold

 

2

PF02987_ma; LE76_BRANA (2e-5)

Q39873

SOYBN

Seed, Leaf, Root

ABA, Canon, Salt

 

2

PF02987_ma; EDC8_DAUCA (8e-37)

Q40696

ORYSA

Root

ABA, Salt

3(5)

2

PF02987_ma; LEA1_HORVU (2e-51)

Q40709

ORYSA

Shoot

notABA, Cold Mannitol

3(3)

2

PF02987_ma; LEA3_MAIZE (2e-44)

Q40869

PICGL

Embryo

ABA

 

2

PF02987_ma; LEA1_HORVU (9e-14)

Q40929

PSEMZ

Seed

Cold, Canon

3(1)

5

PF02987_ma; LE76_BRANA (2e-23)

Q41060

PEA

Seed

notABA, Sucrose, notCanon

3(1)

2

PF02987_ma; LE76_BRANA (8e-14)

Q41154

RICFL

Thalli

ABA, Desc

 

2

PF02987_ma; EDC8_DAUCA (1e-31)

Q41213

BRANA

Shoot, Seed

notABA, Cold notDesc, notCanon

 

2

PF02987_hmm; EDC8_DAUCA (2e-5)

Q42386

BRANA

Leaf

notABA, Cold

 

2

PF02987_hmm; EDC8_DAUCA (5e-6)

Q42512

ARATH

Shoot

ABA, Cold, Desc

 

2

LEA3_MAIZE (6e-5)

Q95V77

APHAV

Whole animal

Desc

3(1)

2

LEA1_HORVU (1e-13)

Q96246

ARATH

Seed, immature silique

ABA, Canon

3(1)

2

PF02987_ma; EDC8_DAUCA (1e-73)

Q9M4T9

WHEAT

Shoot

ABA, Cold

3(1)

2

PF02987_ma; LEA1_HORVU (1e-26)

Q9SDV6

WHEAT

Shoot

Cold, notABA notDesc, notSalt

2S(3)

2

PF02987_ma Q39873 (2e-4)

Q9XET0

SOYBN

Seed

Canon

3(4)

5

PF02987_ma; LE7_GOSHI (2e-28)

Q9XFD0

WHEAT

Shoot

ABA, Cold

3(4)

2

PF02987_ma; LEA1_HORVU (4e-56)

  1. LEA Group 3 proteins, with the exemplars being LE7_GOSHI and LE76_BRANA. The columns are: 1) the protein identifier, 2) a code for the species (see Table 10), 3) the tissue(s) in which it has been found, 4) the conditions that give rise (or fail to give rise) to the expression of the gene, 5) whether the Group 3 motif or poly-lysine stutters are detected using agrep and the number of times each is found, 6) the superfamilies/stand-alone clusters in which the protein is found and 7) other evidence for accepting the protein as LEA Group 3. Note the presence in two cases of the 2S (i.e. poly-serine) motif.