LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles

Table 4 LEA Protein Group 4 (D113) Exemplar(s): LE13_GOSHI

ID	Species	Tissue	Expression	Pep	SF	Evidence
LE11_HELAN	HELAN	Seed, Shoot	ABA, Desc, Canon		2	PF03760_hmm; PM1_SOYBN (7e-27)
LE13_GOSHI	GOSHI	Seed	ABA, Canon		9	PF03760_hmm; PM1_SOYBN (1e-19)
LE25_LYCES	LYCES	Leaf	ABA, Desc		2	PF03760_hmm; PM1_SOYBN (9e-18)
O24442	PHAVU	Root, Embryo	ABA, Desc, Canon		1	PF03760_hmm PM1_SOYBN (2e-32)
PM1_SOYBN	SOYBN	Seed	ABA, Canon	2Y(1)	1	PF03760_ma

LEA Group 4 proteins, with the exemplars being LE13_GOSHI. The columns are: 1) the protein identifier, 2) a code for the species (see Table 10), 3) the tissue(s) in which it has been found, 4) the conditions that give rise (or fail to give rise) to the expression of the gene, 5) whether any of the LEA Group 1, 2 or 3 motifs or poly-lysine stutters are detected using agrep and the number of times each is found, 6) the superfamilies/stand-alone clusters in which the protein is found and 7) other evidence for accepting the protein as LEA Group 4. Note the presence in one case of the 2Y motif.

ISSN: 1471-2105