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Table 7 LEA Protein Group Lea5 (D73) Exemplar(s): LE5A_GOSHI

From: LEAping to conclusions: A computational reanalysis of late embryogenesis abundant proteins and their possible roles

ID

Species

Tissue

Expression

Pep

SF

Evidence

LE5A_GOSHI

GOSHI

Leaf

Desc

2S(4)

(299)

PF03242_hmm

LE5D_GOSHI

GOSHI

Leaf

Desc

2S(4)

(299)

PF03242_ma

Q39644

CITSI

Leaf, Ovule

Salt, notCold

  

PF03242_hmm, LE5D_GHOSHI (2.4e-46)

  1. Lea5/D73 proteins – currently not part of any numbering scheme for LEA proteins – with the exemplar being LE5A_GOSHI. The columns are: 1) the protein identifier, 2) a code for the species (see Table 10), 3) the tissue(s) in which it has been found, 4) the conditions that give rise (or fail to give rise) to the expression of the gene, 5) whether any of the LEA Group 1, 2 or 3 motifs or poly-lysine stutters are detected using agrep and the number of times each is found, 6) the superfamilies/stand-alone clusters in which the protein is found and 7) other evidence for accepting the protein as LEA Group Lea5/D73. Note the presence in two cases of the 2S motif (poly-serine stutter). Note also that two of the three proteins are found in a single, stand-alone cluster containing just the pair of proteins, while the other sequence is not found in any cluster.