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Table 3 Statistical test of gene expression at gene level.

From: PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis

EC_ID

Enzyme_Name

Locus

Signficance

Regulation

1.2.1.12

Glyceraldehyde 3-phosphate dehydrogenase

At1g13440

S

Up

  

At3g26650

S

Up

  

At3g04120

S

Down

  

At1g79530

NS

 
  

At1g16300

S

Up

  

At1g12900

S

Up

  

At1g42970

NS

 

2.2.1.1

Transketolase.

At2g45290

NS

 
  

At3g60750

S

Up

2.6.1.2

Alanine aminotransferase.

At1g23310

S

Up

2.7.1.19

Phosphoribulokinase.

At1g32060

S

Up

2.7.2.3

Phosphoglycerate kinase.

At1g56190

S

Up

  

At1g79550

S

Down

  

At3g12780

S

Up

3.1.3.11

Fructose-bisphosphatase.

At1g43670

NS

 
  

At3g54050

S

Up

3.1.3.37

Sedoheptulose-bisphosphatase.

At3g55800

S

Up

4.1.1.39

Ribulose-bisphosphate carboxylase.

At1g67090

S

Up

  

At5g38430

S

Up

  

At5g38410

S

Up

  

At5g38420

S

Up

4.1.2.13

Fructose-bisphosphate aldolase.

At2g01140

NS

 
  

At2g21330

S

Up

  

At2g36460

NS

 
  

At3g52930

S

Up

  

At4g26530

NS

 
  

At4g38970

S

Up

5.3.1.1

Triosephosphate isomerase.

At3g55440

NS

 
  

At2g21170

S

Up

  1. This is an example to identify genes that are affected by experimental treatment for the Calvin cycle pathway. S means significant and NS means non-significant. Significance level is 0.05.
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BMC Bioinformatics

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