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Table 4 Summary of the results on the CASP4 accepted prediction models

From: Amino acid empirical contact energy definitions for fold recognition in the space of contact maps

target pdb id. n. res. energy s. a. par. n. models RMSD range RMSD pred. energy pred. s. a. par. pred.
86 1fw9 164 -2.46 0.278 53 13.04 – 33.26 15.79 -1.77 0.48
87 1i74 304 -2.37 0.276 61 14.71 – 49.16 16.00 -1.61 0.46
89 1e4f 378 -2.44 0.266 70 13.98 – 67.53 13.98 -1.78 0.41
90 1g0s 201 -1.84 0.530 88 4.67 – 45.25 6.12 -1.51 0.46
92 1im8 219 -2.44 0.336 84 2.92 – 32.47 2.92 -1.77 0.46
94 1fsi 179 -2.23 0.443 56 9.78 – 38.71 15.24 -1.81 0.46
95 1l7c 234 -2.09 0.384 81 9.73 – 34.10 12.86 -1.94 0.42
96 1e2x 223 -2.41 0.328 82 3.18 – 31.22 3.65 -1.60 0.46
97 1g7d 106 -1.53 0.345 136 7.92 – 18.12 9.22 -1.59 0.45
98 1fc3 119 -2.45 0.461 115 7.50 – 40.42 11.36 -2.39 0.45
100 1qjv 342 -2.24 0.294 48 10.34 – 112.23 10.39 -1.48 0.48
102 1e68 70 -2.42 0.468 111 3.55 – 34.62 3.91 -0.60 0.46
103 1ga6 369 -2.64 0.217 67 4.38 – 71.71 4.38 -2.04 0.38
104 1fl9 157 -2.22 0.421 88 6.21 – 37.95 7.95 -1.70 0.47
105 1h5p 95 -1.29 0.462 91 6.10 – 24.11 11.99 -1.38 0.40
106 1ijx 125 -2.39 0.581 75 8.47 – 26.55 9.21 -2.76 0.48
107 1i82 189 -2.22 0.273 88 10.88 – 38.55 12.75 -1.68 0.45
108 1j83 178 -2.34 0.276 64 7.75 – 66.56 7.76 -1.54 0.47
111 1e9i 430 -2.30 0.200 92 1.60 – 81.08 1.86 -1.92 0.23
112 1e3j 350 -2.65 0.269 87 11.21 – 97.16 11.93 -2.02 0.36
113 1e3w 251 -2.27 0.342 92 2.03 – 41.72 2.40 -2.02 0.35
114 1gh5 87 -2.55 0.457 85 6.58 – 32.14 6.58 -0.58 0.37
115 1fwk 296 -2.47 0.280 56 12.16 – 59.64 18.68 -1.40 0.46
116 1ewq 746 -2.28 0.315 40 8.38 – 115.82 14.41 -1.50 0.47
117 1j90 195 -2.20 0.362 79 2.87 – 35.27 2.87 -1.68 0.38
118 1fzr 129 -1.53 0.681 80 13.72 – 26.35 18.82 -1.33 0.46
119 1krh 337 -2.50 0.309 87 2.74 – 82.93 2.88 -2.06 0.34
120 1fu1 174 -1.72 0.563 50 1.32 – 44.20 19.04 -1.15 0.31
121 1g29 372 -2.50 0.329 90 3.35 – 100.88 3.70 -1.90 0.38
122 1geq 241 -2.65 0.274 97 2.09 – 41.36 2.73 -2.08 0.39
123 1exs 160 -2.11 0.481 111 3.30 – 36.92 3.42 -2.17 0.35
124 1jad 235 -1.22 0.435 64 3.51 – 89.91 23.85 -1.25 0.47
125 1gak 137 -1.93 0.378 113 3.26 – 31.68 3.26 -1.75 0.41
126 1f35 157 -1.99 0.487 81 9.70 – 29.48 13.96 -1.23 0.47
127 1g8p 321 -2.38 0.327 74 11.15 – 67.04 17.29 -1.98 0.43
  1. Results obtained with contact definition SC+CA with a 1.0 Å cutoff on targets in the CASP4 experiment are summarized. Columns list the target number, the corresponding pdb code, the number of residues, the energy per residue of the experimental structure, the solvent accessibility parameter of the experimental structure, the number of models considered, the range of RMSD, the RMSD of the best structural prediction among the ten lowest energy models, the energy per residue for the same structure and its solvent accessibility parameter.