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Table 4 Summary of the results on the CASP4 accepted prediction models

From: Amino acid empirical contact energy definitions for fold recognition in the space of contact maps

target

pdb id.

n. res.

energy

s. a. par.

n. models

RMSD range

RMSD pred.

energy pred.

s. a. par. pred.

86

1fw9

164

-2.46

0.278

53

13.04 – 33.26

15.79

-1.77

0.48

87

1i74

304

-2.37

0.276

61

14.71 – 49.16

16.00

-1.61

0.46

89

1e4f

378

-2.44

0.266

70

13.98 – 67.53

13.98

-1.78

0.41

90

1g0s

201

-1.84

0.530

88

4.67 – 45.25

6.12

-1.51

0.46

92

1im8

219

-2.44

0.336

84

2.92 – 32.47

2.92

-1.77

0.46

94

1fsi

179

-2.23

0.443

56

9.78 – 38.71

15.24

-1.81

0.46

95

1l7c

234

-2.09

0.384

81

9.73 – 34.10

12.86

-1.94

0.42

96

1e2x

223

-2.41

0.328

82

3.18 – 31.22

3.65

-1.60

0.46

97

1g7d

106

-1.53

0.345

136

7.92 – 18.12

9.22

-1.59

0.45

98

1fc3

119

-2.45

0.461

115

7.50 – 40.42

11.36

-2.39

0.45

100

1qjv

342

-2.24

0.294

48

10.34 – 112.23

10.39

-1.48

0.48

102

1e68

70

-2.42

0.468

111

3.55 – 34.62

3.91

-0.60

0.46

103

1ga6

369

-2.64

0.217

67

4.38 – 71.71

4.38

-2.04

0.38

104

1fl9

157

-2.22

0.421

88

6.21 – 37.95

7.95

-1.70

0.47

105

1h5p

95

-1.29

0.462

91

6.10 – 24.11

11.99

-1.38

0.40

106

1ijx

125

-2.39

0.581

75

8.47 – 26.55

9.21

-2.76

0.48

107

1i82

189

-2.22

0.273

88

10.88 – 38.55

12.75

-1.68

0.45

108

1j83

178

-2.34

0.276

64

7.75 – 66.56

7.76

-1.54

0.47

111

1e9i

430

-2.30

0.200

92

1.60 – 81.08

1.86

-1.92

0.23

112

1e3j

350

-2.65

0.269

87

11.21 – 97.16

11.93

-2.02

0.36

113

1e3w

251

-2.27

0.342

92

2.03 – 41.72

2.40

-2.02

0.35

114

1gh5

87

-2.55

0.457

85

6.58 – 32.14

6.58

-0.58

0.37

115

1fwk

296

-2.47

0.280

56

12.16 – 59.64

18.68

-1.40

0.46

116

1ewq

746

-2.28

0.315

40

8.38 – 115.82

14.41

-1.50

0.47

117

1j90

195

-2.20

0.362

79

2.87 – 35.27

2.87

-1.68

0.38

118

1fzr

129

-1.53

0.681

80

13.72 – 26.35

18.82

-1.33

0.46

119

1krh

337

-2.50

0.309

87

2.74 – 82.93

2.88

-2.06

0.34

120

1fu1

174

-1.72

0.563

50

1.32 – 44.20

19.04

-1.15

0.31

121

1g29

372

-2.50

0.329

90

3.35 – 100.88

3.70

-1.90

0.38

122

1geq

241

-2.65

0.274

97

2.09 – 41.36

2.73

-2.08

0.39

123

1exs

160

-2.11

0.481

111

3.30 – 36.92

3.42

-2.17

0.35

124

1jad

235

-1.22

0.435

64

3.51 – 89.91

23.85

-1.25

0.47

125

1gak

137

-1.93

0.378

113

3.26 – 31.68

3.26

-1.75

0.41

126

1f35

157

-1.99

0.487

81

9.70 – 29.48

13.96

-1.23

0.47

127

1g8p

321

-2.38

0.327

74

11.15 – 67.04

17.29

-1.98

0.43

  1. Results obtained with contact definition SC+CA with a 1.0 Ã… cutoff on targets in the CASP4 experiment are summarized. Columns list the target number, the corresponding pdb code, the number of residues, the energy per residue of the experimental structure, the solvent accessibility parameter of the experimental structure, the number of models considered, the range of RMSD, the RMSD of the best structural prediction among the ten lowest energy models, the energy per residue for the same structure and its solvent accessibility parameter.