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Table 1 Sequence lengths and fragment size distribution for papillomavirus samples obtained from Genbank

From: A computer simulation analysis of the accuracy of partial genome sequencing and restriction fragment analysis in estimating genetic relationships: an application to papillomavirus DNA sequences

Type of Papillomavirus

Genbank Accession Number

Length of Complete Genome (bps)

Length of Genes (bps)

Fragment Size Distribution (digested by MaeI enzyme1)

   

E1 Gene

E6 Gene

E7 Gene

L1 Gene

Number of Fragments

Median Fragment Size (bps)

5% Percentile (bps)

95% Percentile (bps)

HPV4

X70827

7353

1800

422

303

1550

24

215

54

817

HPV6a

L41216

8010

1886

452

297

1502

18

249

43

1151

HPV6b

X00203

7902

1930

452

297

1502

17

207

47

1241

HPV20

U31778

7757

1818

497

309

1550

24

294

9

781

HPV24

U31782

7452

1824

422

291

1538

13

501

55

1354

HPV49

X74480

7560

1830

416

312

1529

18

232

24

1210

HPV63

X70828

7348

1857

425

267

1523

23

221

29

968

HPV13

X62843

7880

1941

452

306

1499

21

352

9

765

HPV29

U31784

7916

1983

446

273

1511

16

435

33

1003

HPV32

X74475

7961

1929

428

315

1511

21

276

36

881

HPV54

U37488

7759

1902

434

288

1493

28

158

20

815

HPV26

X74472

7855

1917

452

315

1511

20

341

47

877

BPV2

M20219

7937

1815

413

384

1493

27

204

17

809

BPV4

X05817

7265

1932

300

363

1562

19

323

31

750

CaninePV

D55633

8607

1794

434

294

1511

24

303

24

715

ChimPV

AF020905

7889

1947

458

300

1505

18

236

35

1504

Mean

 

7778.1

1881.6

431.4

307.1

1518.1

20.7

284.1

32.2

977.5

  1. 1: Data reported for MaeI as an example.