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Table 1 Class membership of 212 pseudoknots from PseudoBase. The sequences were determined by comparative sequence analysis and/or by experimental techniques. The largest class of pseudoknots is simple recursive or even canonical simple recursive.

From: Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

simple recursive pseudoknots
csr-PK 1-nt bulge Rule 2 violated isolated basepair G-A basepair total
135 11 6 17 3 172
complex pseudoknots
internal loop triple helix four helices kissing hairpins large bulge total
23 12 1 3 1 40