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Table 3 Three Best-Fitting Models for Each Gene* Rules are in the same format as in Table 2 (see Methods). In this case, the genes in rows are inputs to genes in columns. The three best combinations of rules are in consecutive rows for each input; i.e., the best fit rule combination is the first row of each input block with the fit score (E) in the first row of the last block in the table. * Models are in rows, e.g., the best-fitting model for SIC1 has the input CLB5 with the rule (1 3 3), MBP1 with rule (3 1 1), and CDC6 with rule (1 2 3) corresponding to the fit error E = 0.689.

From: Linear fuzzy gene network models obtained from microarray data by exhaustive search

  OUTPUTS
INPUTS SIC1 CLB5 CDC20 CLN3 SWI6 CLN1 CLN2 CLB6 SWI4 CDC28 MBP1 CDC6
SIC1 ---         2 2 3   3 2 1 1 1 3
  --- 2 2 3 2 1 3      1 3 3    3 2 1 1 2 3
  --- 2 2 3 2 1 3      1 3 3    3 2 1 1 2 3
CLB5 1 3 3 ---       1 3 3     
  1 3 3 ---     1 1 3       
  1 3 3 ---      1 1 3   3 2 1    
CDC20   3 3 1 --- 3 3 2   3 2 1       1 3 3
   2 3 1 ---    3 3 1       
   2 3 1 ---    3 1 1       1 3 3
CLN3    3 1 2 --- 3 3 1     2 2 3 3 3 2   1 2 3
     --- 3 2 1     2 1 3    1 1 3
  3 1 3    --- 3 3 1        1 1 3
SWI6    1 3 1 3 2 1 ---       3 1 2  
(SBF)    1 3 1 3 1 1 ---     1 2 1   3 1 2 2 3 1
    1 3 1 3 2 1 ---      1 2 3 3 1 1  
CLN1    3 3 1    --- 1 2 3 1 2 3 1 1 2 3 1 1   
    3 2 1    --- 1 3 3 1 2 3   3 1 1   
   1 2 3 3 1 1    --- 1 3 3 1 3 3   3 1 2   
CLN2   1 1 3 3 1 1 3 1 3   1 3 3 --- 1 1 3     
   1 1 3 3 2 1 3 1 3   1 3 3 --- 1 1 3     
   1 1 3   3 1 3   1 3 3 --- 1 1 3     
CLB6   1 2 3    1 1 3 1 1 3   ---   1 1 3 1 3 3 3 1 3
   1 2 3    1 1 3 1 1 3 1 1 3 ---   1 1 3 1 3 3  
    3 3 1   1 1 3 1 1 3   --- 1 2 3   1 3 3  
SWI4          ---   3 2 1  
(SBF) 1 1 3    2 3 3      --- 3 3 2   
          ---   3 2 1 1 2 3
CDC28      3 1 3      ---   
           ---   
      3 1 2      ---   
MBP1 3 1 1     3 3 1    2 1 3 3 3 1   ---  
(MBF) 3 1 1     2 3 1    1 2 3 3 3 1   ---  
  3 2 1     3 3 1 2 3 2   1 1 3 3 3 1 2 2 3 ---  
CDC6 1 2 3 1 2 3   1 1 3       3 2 3   ---
  1 3 3    1 2 3 1 3 1     3 2 3 3 2 3   ---
  1 2 3    2 2 3      2 1 3 3 2 3   ---
Fit ( E ) 0.689 0.881 0.703 0.792 0.620 0.943 0.877 0.714 0.782 0.510 0.624 0.764
  0.643 0.875 0.702 0.768 0.599 0.930 0.837 0.706 0.768 0.508 0.624 0.758
  0.631 0.852 0.695 0.746 0.596 0.916 0.835 0.705 0.763 0.498 0.622 0.720