Skip to main content

Table 3 Summary of the overlap study of the two astrocytoma progression marker data sets. A. Internal consistency of the methods under comparison. k = Khatua et al. data set51; vdb = van den Boom et al. data set52 B. Number of significant genes that overlap between the two data sets in the significant gene list for each method. C. Comparison (% overlap) of methods in the k data set. D. Comparison (% overlap) of methods in the vdb data set

From: Tests for finding complex patterns of differential expression in cancers: towards individualized medicine

A

% overlap

k

   
 

test

t-test (p)

t-test (np)

PPST

ABA

vdb

t-test

5.307

   
 

t-test (np)

 

11.248

  
 

PPST

  

15.24

 
 

ABA

   

3.211

B

overlap

k

   

vdb

test

t-test (p)

t-test (np)

PPST

ABA

 

t-test

35

   
 

t-test (np)

 

118

  
 

PPST

  

187

 
 

ABA

   

11

C

 

Test 1

   
 

k

t-test (p)

t-test (np)

PPST

ABA

Test 2

t-test (p)

1

78.527

74.394

2.579

 

t-test (np)

 

1

83

4.678

 

PPST

  

1

1.28

 

ABA

   

1

  

Test 1

   

D

v

t-test (p)

t-test (np)

PPST

ABA

Test 2

t-test (p)

1

46.382

26.649

0

 

t-test (np)

 

1

56.975

5.656

 

PPST

  

1

7.268

 

ABA

   

1