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Table 3 Accuracy scores. The average accuracy, measured by the Q score, is reported for each method on each set of reference alignments.

From: MUSCLE: a multiple sequence alignment method with reduced time and space complexity

Method PREFAB BAliBASE SABmark SMART
MUSCLE 0.648 0.896 0.430 0.856
MUSCLE-prog 0.634 0.883 0.427 0.837
FFTNS1 0.619 0.844 0.376 0.815
MUSCLE-fast 0.616 0.849 0.396 0.813
CLUSTALW 0.588 0.860 0.404 0.823
POA-blast 0.577 0.839 0.352 0.788
POA 0.576 0.834 0.280 0.797