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Table 1 Motifs used in EWS homology model 1. The entries in this table show consensus sequences of the weight matrices used in the model (note that it is possible for two distinct weight matrices to have the same consensus sequence). Motifs are listed in both forwards and reverse-complement orientation, and the two sections of the table indicate whether that motif is given a positive or negative weight in the learned linear model.

From: What can we learn from noncoding regions of similarity between genomes?

Postive

Negative

Forward

Reverse

Forward

Reverse

gtca

tgac

tacgt

acgta

tattg

caata

gggca

tgccc

tgcca

tggca

gtca

tgac

ggca

tgcc

acaat

attgt

tacgt

acgta

gggc

gcccc

gtact

agtac

tact

agta

taac

gtta

cctcc

ggagg

ttt

aaa

ggca

tgcc

acaat

attgt

tattg

caata

caatt

aattg

tattg

caata

cagc

gctg

aaatt

aattt

cag

ctg

caat

attg

cggat

atccg

gtat

atac

aaatt

aattt

ccagg

cctgg

gctcg

cgagc

catg

catg

ggc

gcc

act

agt

  

taagg

cctta

  

aaaaa

ttttt