Table 2 Mean error (ME), root-mean-squared error (RMSE) and correlation coefficient (r) of models in the validation set. Success rates (SR) for efficacy higher than 0.75 or below 0.25 are also given for each feature selection method.
From: Profiled support vector machines for antisense oligonucleotide efficacy prediction
Methods | SVR | P-SVR | ||||
|---|---|---|---|---|---|---|
Selection | All feats. |
| MI(β = 0.75) | RFE | RFE | RFE |
CV method | - | - | - | 8-fold | -RNA | -RNA |
r | 0.356 | 0.367 | 0.374 | 0.398 | 0.430 | 0.440 |
ME | -0.0280 | -0.0223 | -0.0104 | -0.0068 | 0.031 | 0.022 |
RMSE | 0.312 | 0.300 | 0.301 | 0.299 | 0.299 | 0.278 |
SR >0.75 | 82.8 | 87.5 | 86.7 | 87.5 | 83.3 | 83.3 |
SR <0.25 | 71.4 | 73.9 | 71.4 | 73.9 | 76.2 | 82.9 |
