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Table 1 The Outlier mRNA Set (Candidate Target List)

From: A population-based statistical approach identifies parameters characteristic of human microRNA-mRNA interactions

Transcription factors and other nucleic-acid binding proteins (15)
homeo box B8 (HOXB8)
E2F transcription factor 6 (E2F6)
transcription factor 20 (AR1) (TCF20)
DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 (DDX51)
similar to ATP-dependent RNA helicase DDX24 (DEAD-box protein 24) (LOC221311)
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog); translocated to, 1 (MLLT1)
high mobility group AT-hook 2 (HMGA2)
polymerase (DNA directed), theta (POLQ)
strand-exchange protein 1 (SEP1)
hypothetical protein FLJ12994 – RFX DNA-binding domain
similar to LINE-1 reverse transcriptase homolog (LOC285907)
similar to hypothetical protein (L1H 3 region) – related to reverse transcriptase
similar to putative p150 (LOC282945) – related to reverse transcriptase
similar to reverse transcriptase related protein (LOC222252)
similar to RTl1 (LOC376283) – related to reverse transcriptase
Kinases, receptors and other signaling proteins (13)
fyn-related kinase (FRK)
WNK kinase, lysine deficient 3 (PRKWNK3)
protein phosphatase 2, regulatory subunit B (B56), epsilon isoform (PPP2R5E)
EphA5 receptor (EPHA5)
killer cell lectin-like receptor subfamily A, member 1 (KLRA1)
polycystin and REJ (sperm receptor for egg jelly homolog, sea urchin)-like (PKDREJ)
integrin, alpha X (antigen CD11C (p150), alpha polypeptide) (ITGAX)
inositol 1,4,5-triphosphate receptor, type 1 (ITPR1)
hypothetical protein FLJ32810 – RhoGAP domain, SH3 domain
hypothetical protein FLJ00058 – G protein gamma 7
Rho GTPase-activating protein (RICS)
hypothetical protein FLJ30899 – probable ras GAP
similar to ADP-ribosylation factor-like membrane-associated protein (LOC132946) – ARF-like small GTPase domain, Sar1p-like member of the Ras-family
Membrane and extracellular proteins (11)
Laminin, beta 4 (LAMB4)
laminin, gamma 2 (LAMC2)
fibronectin 1 (FN1)
collagen, type IV, alpha 5 (Alport syndrome) (COL4A5)
collagen, type XIX, alpha 1 (COL19A1)
similar to Voltage-dependent anion-selective channel protein 1 (VDAC-1)
ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide (ATP1A2)
complement component 1, q subcomponent, beta polypeptide (C1QB)
hypothetical protein FLJ20506 – transmembrane protein
MAM domain containing glycosylphosphatidylinositol anchor 1 (MDGA1) – Ig, MAM domains
similar to TCAM-1 (LOC284171)
Cytoskeletal domain-containing proteins (7)
myosin heavy chain Myr 8 (MYR8)
ankyrin repeat domain 17 (ANKRD17)
KIAA1817 protein – intermediate filament, ATPase, PDZ, Band 4.1, FERM domains
chromosome 10 open reading frame 39 (C10orf39) – homologous to myosin, plectin
oxysterol binding protein 2 (OSBP2) – pleckstrin homology domain
KIAA1202 protein – PDZ, ATPase domains
hypothetical protein FLJ23529 – homolgous to dynein heavy chain
Miscellaneous or unknown function (26)
cell cycle progression 2 protein (CPR2)
olfactomedin 3 (OLFM3)
histidine rich calcium binding protein (HRC)
interferon-related developmental regulator 1 (IFRD1)
KIAA1301 protein – NEDD4-related E3 ubiquitin ligase NEDL2
KIAA1203 protein – ubiquitin C-terminal hydrolase
hydroxyprostaglandin dehydrogenase 15-(NAD) (HPGD)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 1 (B3GNT1)
KIAA1854 protein – leucine rich repeat C-terminal domains
testis specific, 14 (TSGA14)
chromosome 4 open reading frame 1 (C4orf1)-membrane AND nuclear protein
hypothetical protein FLJ33069
hypothetical protein FLJ38464
hypothetical protein LOC285431
hypothetical protein LOC284107
similar to agCP1362 [Anopheles gambiae str. PEST] (LOC344751)
KIAA1632 protein
similar to hypothetical protein D11Ertd497e (LOC343360)
LOC138724
LOC343460
LOC340963
LOC343220
LOC285842
LOC352767
LOC350293