Table 1 Characteristics and sources of the four test data-sets, columns from left to right show: data-set, lengths, mean pair-wise sequence similarity (mean pair-wise Kimura "2-parameter" distance is shown in parentheses [109]), the number of sequences in each alignment and the alignment and structure sources are given.
From: A comprehensive comparison of comparative RNA structure prediction approaches
| Â | Â | Test data-set characteristics and sources | |||||
|---|---|---|---|---|---|---|---|
Data-set | length | mean pairwise seq. identity | Number of Sequences | Alignment source | Structure source | ||
| Â | Â | High | Med. | High | Med. | Â | Â |
E. coli LSU rRNA | 2904 | 88.1 (0.12) | 72.0 (0.35) | 11 | 11 | Wuyts et al., (2001) | Cannone et al., (2002) |
E. coli SSU rRNA | 1542 | 90.7 (0.08) | 80.0 (0.21) | 11 | 11 | Wuyts et al., (2002) | Cannone et al., (2002) |
E. coli RNase P | 377 | 81.5 (0.09) | 67.1 (0.41) | 9 | 11 | Brown, (1999) | Brown, (1999) |
S. cerevisiae tRNA-PHE | 73 | 84.4 (0.19) | 60.0 (0.71) | 11 | 11 | Griffiths-Jones et al., (2003) | Sundaralingham & Rao, (1975) |