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Table 2 Markov Model Hit probability of seeds on a Markov model of order 5 trained on a large mixed sample of cross-species alignments

From: Improved hit criteria for DNA local alignment

weight spaced seed hit proba transition-constrained seed hit proba
9 M9 = ##_##_##_### 0.822 M9tr= ##@##_##@## 0.845
10 M10 = ##_##_##___##_## 0.716 M10tr= #@@##_##_##@#@ 0.746
11 M11 = ##_##_##_##_### 0.603 M11tr= ##@##_##_##@## 0.632