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Table 3 Seed experiments. Number of high-scoring similarities found with different seed patterns

From: Improved hit criteria for DNA local alignment

sequences

B 9

B 9 tr

B 11

B 11 tr

M 9

M 9 tr

M 11

M 11 tr

IX/V

323

336

275

279

312

325

274

293

IX/XVI

342

354

271

280

349

357

280

295

XVI/IV

1314

1361

1124

1172

1309

1348

1180

1235

MC58/Z2491

361896

380028

341113

364792

385444

392164

359348

366759