Table 1 A comparison of the prediction results based on using different data types. PPI stands for protein-protein Interaction. The percentile rank of the true pathway is defined as the ratio between the number of pathways having a higher score than the "true" pathway to the number of all permuted pathways.
MAPK pathway | PPI | Expression | PPI + Expression | |||
|---|---|---|---|---|---|---|
| Â | The number of pathways having a higher score | Percentile rank of the true pathway | The number of pathways having a higher score | Percentile rank of the true pathway | The number of pathways having a higher score | Percentile rank of the true pathway |
Pheromone Response | 240 | 0.05 | 24 | 0.005 | 1 | 10-3.7 |
Filamentous Growth | 7 | 0.06 | 4 | 0.006 | 0 | 0 |
Cell Wall Integrity | 70 | 0.10 | 80 | 0.11 | 17 | 0.02 |
High Osmolarity | 0 | 0 | 34 | 0.28 | 0 | 0 |