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Table 1 A comparison of the prediction results based on using different data types. PPI stands for protein-protein Interaction. The percentile rank of the true pathway is defined as the ratio between the number of pathways having a higher score than the "true" pathway to the number of all permuted pathways.

From: A computational approach for ordering signal transduction pathway components from genomics and proteomics Data

MAPK pathway PPI Expression PPI + Expression
  The number of pathways having a higher score Percentile rank of the true pathway The number of pathways having a higher score Percentile rank of the true pathway The number of pathways having a higher score Percentile rank of the true pathway
Pheromone Response 240 0.05 24 0.005 1 10-3.7
Filamentous Growth 7 0.06 4 0.006 0 0
Cell Wall Integrity 70 0.10 80 0.11 17 0.02
High Osmolarity 0 0 34 0.28 0 0