Figure 17
From: A probabilistic model for the evolution of RNA structure
Fold-alignment dotplot of nuclear RNase P genes (see Figure 13 for key). From a wide range of potential stems (faint red diagonal lines, plots a-b), the Pair SCFG resolves several sharply using the comparative signal (sharp white diagonal lines, plots d-e). Uncertainty in the primary sequence alignment (wide red lines, plot c) ?? is also resolved by including structural information (arrow white line, plot f).