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Table 3 Green channel parameters estimates. Bootstrapped parameter estimates for the green channel with standard deviations for each combination of array, image method (or pixel intensities) and scanner.

From: Calibration and assessment of channel-specific biases in microarray data with extended dynamical range

array

image

Agilent

Axon

 

method

A

Spot

20.2 ± 0.106

0.51 ± 0.058

16.6 ± 0.165

6.31 ± 0.302

A

GenePix

21.8 ± 0.068

0.20 ± 0.045

20.4 ± 0.123

0.88 ± 0.242

A

pixels

33.6 ± 0.050

10.52 ± 0.048

22.8 ± 0.048

1.57 ± 0.093

B

Spot

19.6 ± 0.094

0.90 ± 0.055

17.2 ± 0.127

2.20 ± 0.231

B

GenePix

21.3 ± 0.046

0.94 ± 0.086

20.1 ± 0.152

1.20 ± 0.326

B

pixels

35.7 ± 0.153

12.85 ± 0.146

21.9 ± 0.041

2.04 ± 0.087

C

Spot

19.8 ± 0.050

1.21 ± 0.073

17.0 ± 0.127

2.75 ± 0.254

C

GenePix

20.8 ± 0.039

0.99 ± 0.086

19.4 ± 0.100

1.11 ± 0.218

C

pixels

21.3 ± 0.024

0.78 ± 0.035

22.0 ± 0.040

2.39 ± 0.082

D

Spot

19.4 ± 0.097

1.49 ± 0.073

17.0 ± 0.194

1.24 ± 0.376

D

GenePix

20.9 ± 0.059

0.80 ± 0.095

20.3 ± 0.126

2.31 ± 0.286

D

pixels

21.6 ± 0.105

0.21 ± 0.124

22.1 ± 0.046

3.10 ± 0.092

E

Spot

18.2 ± 0.121

3.29 ± 0.129

16.5 ± 0.132

2.88 ± 0.240

E

GenePix

20.2 ± 0.081

1.92 ± 0.128

19.2 ± 0.137

0.74 ± 0.264

E

pixels

21.2 ± 0.017

0.13 ± 0.046

21.0 ± 0.032

0.94 ± 0.058

F

Spot

21.4 ± 0.125

0.58 ± 0.103

16.5 ± 0.181

4.79 ± 0.327

F

GenePix

23.7 ± 0.084

1.32 ± 0.116

20.2 ± 0.132

0.34 ± 0.199

F

pixels

24.1 ± 0.019

1.57 ± 0.026

22.4 ± 0.039

1.87 ± 0.071

G

Spot

18.9 ± 0.088

1.62 ± 0.088

16.9 ± 0.149

3.72 ± 0.258

G

GenePix

20.4 ± 0.049

1.10 ± 0.088

20.0 ± 0.164

0.84 ± 0.262

G

pixels

21.0 ± 0.017

0.75 ± 0.024

22.2 ± 0.045

2.60 ± 0.085

H-1

Spot

21.2 ± 0.134

3.25 ± 0.080

18.5 ± 0.090

2.00 ± 0.170

H-1

GenePix

22.6 ± 0.100

3.47 ± 0.107

20.3 ± 0.043

0.63 ± 0.100

H-1

pixels

42.8 ± 1.417

16.68 ± 1.843

21.3 ± 0.033

1.82 ± 0.070

H-2

Spot

19.6 ± 0.229

0.16 ± 0.077

N/A

N/A

H-2

GenePix

21.7 ± 0.104

0.55 ± 0.076

N/A

N/A

H-2

pixels

21.5 ± 0.086

0.29 ± 0.021

N/A

N/A