GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes

BMC Bioinformatics

Table 3 Minimum REQ values for seven datasets using two methods for annotation.

Dataset	GOtcha		Top Hit	GOtcha (-IEA)		Top Hit (-IEA)
	REQ	cutoff	REQ	cutoff	REQ	cutoff	REQ	cutoff
Arabidopsis thaliana	1.63	36	1.35	0.56	1.33	54	1.48	0.71
Caenorhabditis elegans	1.41	68	1.19	0.023	1.82	70	3.38	0.45
Drosophila melanogaster	2.20	35	1.74	0.71	1.15	31	1.99	0.71
Homo sapiens	1.40	52	1.34	0.35	0.95	39	3.12	0.71
Plasmodium falciparum	0.75	51	1.39	0.023	0.67	51	1.69	0.28
Saccharomyces cerevisiae	2.56	38	1.88	0.41	1.27	45	2.03	0.71
Vibrio cholerae	0.91	45	1.71	0.011	1.13	43	1.87	0.11
Mean (+/- SD)	1.55 (0.60)		1.51 (0.24)		1.19 (0.32)		2.22 (0.67)

ISSN: 1471-2105