Table 1 Experimental results
From: Constraint Logic Programming approach to protein structure prediction
Name | N | Time | Energy | RMSD |
|---|---|---|---|---|
1LE0 | 12 | 1.3 s | -9040 | 2.8 / 2.6 (2–11) |
1KVG | 12 | 7.3 s | -14409 | 2.7 / 2.4 (3–11) |
1LE3 | 16 | 2.3 s | -13653 | 3.0 / 2.7 (2–15) |
1EDP | 17 | 20.4 s | -19389 | 4.3 / 1.1 (9–15) |
1PG1 | 18 | 14.6 s | -10126 | 6.0 / 5.2 (4–17) |
1ZDD | 34 | 300 s (limit) | -20412 | 5.6 / 5.6 (5–34) |
17 m25 s | -22350 | 4.0 / 4.0 (5–34) | ||
1VII | 36 | 300 s (limit) | -20860 | 10.4 / 6.7 (4–32) |
1000 s (limit) | -22377 | 9.1 /6.3 (4–32) | ||
7 h42 m | -26408 | 10.2 / 7.8 (4–32) | ||
CF = 0.3 | 3 h58 m | -28710 | 8.0 / 7.4 (4–32) | |
1VII(*) | 36 | 300 s (limit) | -17948 | 9.2 / 7.3 (4–32) |
1000 s (limit) | -17948 | 9.2 /7.3 (4–32) | ||
3 h20 m | -21211 | 10.3 / 6.9 (4–32) | ||
1E0M | 37 | 300 s (limit) | -13830 | 6.5 / 5.8 (8–29) |
1200 s (limit) | -24613 | 8.4 / 3.6 (8–29) | ||
10 h (limit) | -26592 | 8.8 / 3.4(8–29) | ||
24 h (limit) | -30163 | 8.9 / 4.4 (8–29) | ||
2GP8 | 40 | 300 s (limit) | -10303 | 10.5 / 8.9 (6–38) |
1000 s (limit) | -24748 | 4.1 / 3.5 (6–38) | ||
10 h (limit) | -26196 | 4.9 / 3.5 (6–38) | ||
10 h39 m | -26196 | 4.9 / 3.5 (6–38) | ||
1ED0 | 46 | 300 s (limit) | -29970 | 7.3 / 4.1 (3–40) |
1000 s (limit) | -32369 | 8.6 / 7.1 (3–40) | ||
9 h38 m | -38218 | 8.0 / 7.2 (3–40) | ||
1ENH | 54 | 300 s (limit) | -12480 | 10.4 / 8.9 (8–52) |
1000 s (limit) | -12480 | 10.4 / 8.9 (8–52) | ||
10 h(limit) | -23373 | 9.9 / 8.6 (8–52) | ||
24 h (limit) | -23373 | 9.9 / 8.6 (8–52) | ||
6PTI | 58 | 300 s (limit) | no sol. | |
1000 s (limit) | -29709 | 10.0 / 9.7 (3–55) | ||
10 h (limit) | -37837 | 10.0 / 9.7 (3–55) | ||
24 h (limit) | -37837 | 10.0 / 9.7 (3–55) | ||
CF = 0.25 | 48 h (limit) | -42096 | 9.7 / 9.4 (3–55) | |
CF= 0.18 | 24 h (limit) | -47451 | 10.9 / 10.7 (3–55) | |
2IGD | 60 | 300 s (limit) | -24158 | 19.3 / 16.3 (6–59) |
1000 s (limit) | -29178 | 19.0 /16.2 (6–59) | ||
10 h (limit) | -37479 | 16.9 / 15.0(6–59) | ||
24 h (limit) | -37479 | 16.9 / 15.0 (6–59) | ||
CF = 0.17 | 4 h 59 m | -40588 | 12.6 / 11.5 (6–59) | |
2ERA | 61 | 300 s (limit) | -28993 | 11.6 / 10.6 (3–55) |
9 m28 s, | -30746 | 12. 3/ 12.1 (3–55) | ||
ss = 5 | 15 m13 s | -31692 | 12.7/11.6 (3–55) | |
CF = 0.25, ss = 5 | 15 m12 s | -33693 | 10.9/9.3 (3–55) | |
CF = 0.25, ss = 4 | 1000 s (limit) | -32985 | 12.3/12.4 (3–55) | |
CF = 0.19, ss = 5 | 1000 s (limit) | -34275 | 10.6/8.9 (3–55) | |
CF = 0.19, ss = 4 | 1000 s (limit) | -38138 | 11.6/10.6 (3–55) | |
1SN1 | 63 | 300 s (limit) | no sol. | |
1000 s (limit) | -53888 | 13.0 / 10.5 (2–51) | ||
10 h (limit) | -57615 | 11.9/ 9.6 (2–51) | ||
CF = 0.25, ss = 5 | 10 h (limit) | -47121 | 8.6 / 8.1 (2–51) | |
1YPA | 63 | 300 s (limit) | -36626 | 16.1 / 9.4 (12–52) |
1000 s (limit) | -33886 | 17.1 / 10.9 (12–52) | ||
10 h (limit) | -33886 | 17.1 / 10.9 (12–52) | ||
CF = 0.17 | 100 s (limit) | -26297 | 12.5 / 10.5 (12–52) | |
CF = 0.17 | 10 h (limit) | -60244 | 12.9 / 9.8 (12–52) |