Skip to main content
Figure 2 | BMC Bioinformatics

Figure 2

From: Optimal cDNA microarray design using expressed sequence tags for organisms with limited genomic information

Figure 2

Sequence Diversity Plot (SDP) includes both sequence diversity and probe functional representativeness SDP summarized three indexes [the sequence dissimilarities index (SDI; Eq. (1)), the sequence contiguity index (CI; Eq. (2)), and the unique probe GO index (UPGI; Eq. (3)) in molecular function domain] among three clustering linkage methods (single, average and complete linkage methods). All indexes range between zero and one in a linear scale in this figure. Sequence diversity decreases as the number of clusters (number of selected probes) increases; functional representativeness increases as the number of probes selected increase.

Back to article page

BMC Bioinformatics

ISSN: 1471-2105

Contact us