Table 1 Results of the automatic mapping of PDB structures to SCOP superfamilies.
From: SCOPmap: Automated assignment of protein structures to evolutionary superfamilies
| Â | v1.61-v1.63 test set | v1.63-v1.65 test set | ||||||
|---|---|---|---|---|---|---|---|---|
Result | SCOPmap | SCOPmap, sequence comparison tools only | SUPERFAMILY | SCOPmap | ||||
| Â | # of domains | % of test set (bold: correct assignments) | # of domains | % of test set (bold: correct assignments) | # of domains | % of test set (bold: correct assignments) | # of domains | % of test set (bold: correct assignments) |
Assignment to correct SCOP superfamily, boundaries accurate within 10 residues | 3730 | 81.4% | 3507 | 76.6% | 3211 | 70.1% | 4136 | 83.7% |
Assignment to correct SCOP superfamily, boundaries not accurate within 10 residues | 292 | 6.4% | 211 | 4.6% | 662 | 14.4% | 372 | 7.5% |
Domain belongs to a new SCOP superfamily, no assignment made | 284 | 6.2% | 289 | 6.3% | 241 | 5.3% | 154 | 3.1% |
Acceptable assignment, but not the same assignment as given in SCOP | 13 | 0.3% | 0 | 0% | 71 | 1.5% | 12 | 0.2% |
Incorrect assignment | 0 | 0% | 0 | 0% | 0 | 0% | 7 | 0.2% |
Domain belongs to an existing SCOP superfamily, no assignment made | 261 | 5.7% | 573 | 12.5% | 395 | 8.6% | 260 | 5.3% |