From: SCOPmap: Automated assignment of protein structures to evolutionary superfamilies
Comparison Method | Number of Domains First Identified By This Method [4035 mapped domains plus 50 domains that are identified but not assigned (see Table 4)] | Average Sequence Identity Between Query and Closest Superfamily Representative | % of Domains Unmapped by Less Sensitive Methods that are Identified by This Method |
---|---|---|---|
BLAST | 3163 | 80.1% | 69.1% |
RPS-BLAST | 514 | 41.1% | 36.3% |
PSI-BLAST | 104 | 26.1% | 11.5% |
COMPASS | 26 | 27.2% | 3.3% |
MAMMOTH | 100 | 29.7% | 12.9% |
DaliLite | 124 | 17.4% | 18.4% |
correlation of conservation patterns | 23 | 11.1% | 4.2% |
agreement of alignments produced by DaliLite and by gapped BLAST, RPS-BLAST, or PSI-BLAST | 31 | 12.1% | 5.9% |