Table 4 SCOPmap: Automated assignment of protein structures to evolutionary superfamlies.
From: SCOPmap: Automated assignment of protein structures to evolutionary superfamilies
Whether Domain is Identified by at Least One Comparison Method | Reason Domain is Unmapped | Number of Domains | % of Unassigned Domains | |
|---|---|---|---|---|
The domain is identified by one or more methods, but is not assigned. | The boundary assigned to one domain in the query chain is extended too far and, as a result, a second domain assignment is missed. | 22 | 8.5% | Â |
| Â | Unresolved choice between conflicting superfamilies. | 28 | 10.7% | 19.2% |
Domain is not identified by any comparison tool used in SCOPmap. | DaliLite hits to superfamily representatives fail "accepted hit" cutoffs. | 108 | 41.4% | 80.8% |
| Â | At least one superfamily representative identified as potential hit via MAMMOTH, but DaliLite produces no output for the comparison. | 16 | 6.1% | Â |
| Â | No superfamily representatives have MAMMOTH scores high enough to be identified as potential hits via DaliLite. | 87 | 33.3% | Â |