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Table 3 Comparison of seven ras family clusters provided by right singular vectors with KOG and Homologen clusters. Only proteins having one of the five strongest projections ("top five") for a given singular vector are used in the comparison. Few genomes have KOG members specifically identified by NCBI, however, most or all of the "top 5" proteins for a given rsv would likely be identified as members of the same KOG family. For 197a (Rab11), the KOG # provided in parentheses is that of the closely related human protein.

From: An SVD-based comparison of nine whole eukaryotic genomes supports a coelomate rather than ecdysozoan lineage

rsv#

gi#

projection

organism

GeneName

kog#

hg#

197a

6679583

0.06900

Mmus

Rab11b

(0087)

3109

(Rab11)

14249144

0.06892

Rnov

Rab11b

na

3109

 

31209781

0.06827

Agam

na

na

3109

 

31209783

0.06827

Agam

na

na

3109

 

31209785

0.06826

Agam

na

na

3109

236a

31542143

0.05883

Mmus

Arha

na

1257

(ApRas)

16923986

0.05883

Rnov

Arha2

na

1257

 

10835049

0.05873

Hsap

RHOA

0393

1257

 

28395033

0.05610

Hsap

ARHC

0393

22408

 

en131312

0.05412

Frub

na

na

na

277

27689505

0.07229

Rnov

Rab5c

na

20961

(Rab5)

4759020

0.07214

Hsap

RAB5C

0092

20961

 

31225537

0.07022

Agam

na

na

20961

 

31225545

0.07022

Agam

na

na

20961

 

31225553

0.07022

Agam

na

na

20961

277a

15718763

0.04278

Hsap

KRAS2

0395

2159

(HaRas)

4885425

0.04243

Hsap

HRAS

0395

3907

 

34861217

0.04243

Rnov

Hras1

na

3907

 

4505451

0.04176

Hsap

NRAS

0395

20564

 

34859609

0.04165

Rnov

Nras

na

20564

350a

9845511

0.07403

Hsap

RAC1

0393

23126

(RasC3)

38081613

0.07403

Mmus

Rac1

na

23126

 

9845509

0.06942

Hsap

RAC1b

0393

23126

 

4826962

0.06820

Hsap

RAC3

0393

3705

 

18875380

0.06820

Mmus

Rac3

na

3705

387a

34861437

0.03486

Rnov

Rab1B

na

23689

(Rab1)

21313162

0.03413

Mmus

Rab1B

na

23689

 

13569962

0.03400

Hsap

RAB1B

0084

23689

 

27709432

0.03400

Rnov

Rab1B-like

na

27733

 

en156199

0.03396

Frub

na

na

na

389a

4758988

0.04851

Hsap

RAB1A

0084

3067

(Rab/Ras)

6679587

0.04851

Mmus

Rab1A

na

3067

 

13569962

0.04840

Hsap

RAB1B

0084

23689

 

en160503

0.04824

Frub

na

na

na

 

13592035

0.04811

Rnov

Rab1A

na

3067