Table 1 Fraction of compositional atypical genes in microbial genomes. The numbers in the column CU LO are as in [21], column MPW gives the fraction of CA genes as determined by the MPW approach described here.
Species | CA LO [%] | MPW [%] |
|---|---|---|
Escherichia coli O157:H7 | Â | 15.7 |
Salmonella enterica subsp. Enterica | Â | 14.8 |
Vibrio cholerae chr. II | Â | 14.2 |
Salmonella typhimurium LT2 | Â | 13.3 |
Streptococcus pneumoniae TIGR4 | Â | 13.0 |
Mesorhizobium loti | Â | 12.9 |
Mycoplasma pneumoniae | 11.6 | 12.9 |
Ralstonia solanacearum megaplasmid | Â | 12.9 |
Shigella flexneri | Â | 12.6 |
Escherichia coli K-12 | 12.8 | 12.5 |
Ralstonia solanacearum chromosome | Â | 11.9 |
Streptococcus agalactiae | Â | 10.9 |
Streptococcus pyogenes | Â | 10.9 |
Methanosarcina acetivorans | Â | 10.8 |
Listeria innocua | Â | 10.6 |
Corynebacterium glutamicum | Â | 10.2 |
Yersinia pestis | Â | 10.2 |
Bacillus subtilis | 7.5 | 10.1 |
Xanthomonas axonopodis | Â | 9.7 |
Xanthomonas campestris | Â | 9.4 |
Listeria monocytogenes | Â | 9.0 |
Lactococcus lactis | Â | 8.9 |
Thermoanaerobacter tengcongensis | Â | 8.5 |
Methanosarcina mazei | Â | 8.1 |
Thermoplasma volcanium | Â | 7.9 |
Staphylococcus aureus | Â | 7.7 |
Sulfolobus tokodaii | Â | 7.7 |
Bacillus halodurans | Â | 7.4 |
Vibrio cholerae chr. I | Â | 7.4 |
Pyrococcus abyssi | Â | 6.8 |
Oceanobacillus iheyensis | Â | 6.4 |
Sulfolobus solfataricus | Â | 6.3 |
Aeropyrum pernix | 3.2 | 6.1 |
Chlamydophila pneumoniae | Â | 6.1 |
Thermotoga maritime | 6.4 | 6.0 |
Brucella melitensis | Â | 5.9 |
Chlamydophila pneumoniae AR39 | Â | 6.1 |
Haemophilus influenzae Rd | 4.5 | 5.9 |
Synechocystis sp. PCC 6803 | 16.6 | 5.6 |
Sinorhizobium meliloti | Â | 5.4 |
Thermoplasma acidophilum | Â | 5.1 |
Picrophilus torridus | Â | 5.0 |