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Table 1 Fraction of compositional atypical genes in microbial genomes. The numbers in the column CU LO are as in [21], column MPW gives the fraction of CA genes as determined by the MPW approach described here.

From: SIGI: score-based identification of genomic islands

Species CA LO [%] MPW [%]
Escherichia coli O157:H7   15.7
Salmonella enterica subsp. Enterica   14.8
Vibrio cholerae chr. II   14.2
Salmonella typhimurium LT2   13.3
Streptococcus pneumoniae TIGR4   13.0
Mesorhizobium loti   12.9
Mycoplasma pneumoniae 11.6 12.9
Ralstonia solanacearum megaplasmid   12.9
Shigella flexneri   12.6
Escherichia coli K-12 12.8 12.5
Ralstonia solanacearum chromosome   11.9
Streptococcus agalactiae   10.9
Streptococcus pyogenes   10.9
Methanosarcina acetivorans   10.8
Listeria innocua   10.6
Corynebacterium glutamicum   10.2
Yersinia pestis   10.2
Bacillus subtilis 7.5 10.1
Xanthomonas axonopodis   9.7
Xanthomonas campestris   9.4
Listeria monocytogenes   9.0
Lactococcus lactis   8.9
Thermoanaerobacter tengcongensis   8.5
Methanosarcina mazei   8.1
Thermoplasma volcanium   7.9
Staphylococcus aureus   7.7
Sulfolobus tokodaii   7.7
Bacillus halodurans   7.4
Vibrio cholerae chr. I   7.4
Pyrococcus abyssi   6.8
Oceanobacillus iheyensis   6.4
Sulfolobus solfataricus   6.3
Aeropyrum pernix 3.2 6.1
Chlamydophila pneumoniae   6.1
Thermotoga maritime 6.4 6.0
Brucella melitensis   5.9
Chlamydophila pneumoniae AR39   6.1
Haemophilus influenzae Rd 4.5 5.9
Synechocystis sp. PCC 6803 16.6 5.6
Sinorhizobium meliloti   5.4
Thermoplasma acidophilum   5.1
Picrophilus torridus   5.0