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Table 3 Combinations of acceptor and donor species for the generation of random sequences mimicking the amelioration process.

From: SIGI: score-based identification of genomic islands

Acceptor GC-Content [%] Donor
   I II III IV V VI VII VIII
Mesorhizobium loti 63 Pseudomonas Ralstonia Halobacterium Chloroflexus Corynebacterium Thermotoga Staphylococcus Fusobacterium
   denitrificans 2.1 solanacearum 4.5 salinarum 6.4 aurantiacus 7.6 glutamicum 9.1 maritima 11.0 suis 17.8 nucleatum 24.6
Escherichia coli K-12 52 Synechococcus Bacillus Methanosarcina Thermotoga Sinorhizobium Ralstonia Thermus Streptomyces
   5.0 circulans 4.4 acetivorans 6.5 maritima 9.0 meliloti 9.6 solanacearum 13.4 thermophilus 14.1 natalensis 15.5
Pyrococcus horikoshii 42 Butyrivibrio Sulfolobus Aquifex Pyrobaculum Bacillus Mesorhizobium Myxococcus Cellulomonas
   fibrisolvens 6.2 islandicus 4.4 aeolicus 5.9 aerophilum 7.0 circulans 8.2 loti 13.4 xanthus 18.4 fimi 22.5
Clostridium acetobutylicum 31 Borrelia Methanothermus Anaplasma Neisseria Bacillus Mesorhizobium Myxococcus Cellulomonas
   burgdorferi 2.7 fervidus 3.3 phagocytophilum 6.3 meningitidis 15.7 caldolyticus 17.1 loti 21.1 xanthus 26.3 fimi 30.3
  1. The columnAcceptor gives the name of the "accepting" species. Column I to VIII list the names of those species selected as donors and the Manhattandistance to the acceptor's codon frequency table.