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Table 3 Combinations of acceptor and donor species for the generation of random sequences mimicking the amelioration process.

From: SIGI: score-based identification of genomic islands

Acceptor

GC-Content [%]

Donor

  

I

II

III

IV

V

VI

VII

VIII

Mesorhizobium loti

63

Pseudomonas

Ralstonia

Halobacterium

Chloroflexus

Corynebacterium

Thermotoga

Staphylococcus

Fusobacterium

  

denitrificans 2.1

solanacearum 4.5

salinarum 6.4

aurantiacus 7.6

glutamicum 9.1

maritima 11.0

suis 17.8

nucleatum 24.6

Escherichia coli K-12

52

Synechococcus

Bacillus

Methanosarcina

Thermotoga

Sinorhizobium

Ralstonia

Thermus

Streptomyces

  

5.0

circulans 4.4

acetivorans 6.5

maritima 9.0

meliloti 9.6

solanacearum 13.4

thermophilus 14.1

natalensis 15.5

Pyrococcus horikoshii

42

Butyrivibrio

Sulfolobus

Aquifex

Pyrobaculum

Bacillus

Mesorhizobium

Myxococcus

Cellulomonas

  

fibrisolvens 6.2

islandicus 4.4

aeolicus 5.9

aerophilum 7.0

circulans 8.2

loti 13.4

xanthus 18.4

fimi 22.5

Clostridium acetobutylicum

31

Borrelia

Methanothermus

Anaplasma

Neisseria

Bacillus

Mesorhizobium

Myxococcus

Cellulomonas

  

burgdorferi 2.7

fervidus 3.3

phagocytophilum 6.3

meningitidis 15.7

caldolyticus 17.1

loti 21.1

xanthus 26.3

fimi 30.3

  1. The columnAcceptor gives the name of the "accepting" species. Column I to VIII list the names of those species selected as donors and the Manhattandistance to the acceptor's codon frequency table.