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Table 1 Accuracy of RescueNet in 15 bacterial genomes.

From: Gene prediction using the Self-Organizing Map: automatic generation of multiple gene models

Organism GC % Number of Genes Annotated Training Set Size Sn. (%) Sn. >225 bp (%) Sn. Conserved (%) Sp. (%)
Buchnera 26.2 564 292 88.65 91.24 89.97 96.18
B. burgdorferi 28.6 857 403 90.54 96.39 95.66 98.02
C. jejuni 30.6 1654 673 90.14 95.08 92.14 99.23
M. jannaschii 31.4 1715 692 88.39 91.82 91.02 96.50
M. genitalium 31.7 483 301 89.44 91.52 89.89 92.32
H. influenzae 38.0 1754 885 91.56 96.34 93.10 98.01
H. pylori 38.9 1593 712 91.39 96.80 95.70 95.49
A. aeolicus 43.3 1517 723 95.78 96.54 95.57 87.80
B. subtilis 43.5 4220 1832 87.93 94.95 89.86 89.47
Synechocystis 47.6 3169 954 93.18 96.53 91.55 90.95
Y. pestis 47.6 4043 1640 91.04 94.84 93.66 88.29
E. coli 50.8 4290 1983 89.39 92.85 92.54 89.04
D. radiodurans 67.0 2622 1436 84.28 85.65 92.61 95.50
R. solanacearum 67.0 3442 1748 84.74 88.60 89.82 93.20
S. coelicolor 72.1 7851 956 88.35 91.55 91.55 90.10
  1. The genomes are listed according to ascending G+C content. For each genome, the table shows: Genome GC content (GC %), the number of genes annotated in GenBank for that genome, the number of genes in the RescueNet training set, overall RescueNet sensitivity (Sn.), the sensitivity of RescueNet in finding genes longer than the 225 bp minimum prediction size (Sn. >225 bp), the sensitivity of RescueNet in finding genes that have been confirmed by homology with other genes in GenBank (Sn. Conserved), and finally, overall RescueNet specificity (Sp.)