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Table 1 Restriction enzymes with known crystallographic structure

From: Frequent occurrence of recognition Site-like sequences in the restriction endonucleases

NAME

Recognition Sequence (RS)

Codon Potential

Crystal Name

AC-# Gene-Bank

N.A.-residue#

AC-# Swiss-Prot

A.A.-residue#

RS-like Oligonucleotides (-# of copy)

BamHI

G†GATCC

GDISPRLA

1BHM

X55285

642

P23940

213

GGCCTA-1, GCCTA-1, TAGG-1, GGAT-2, AGGC-1, GATC-1

BgIII

A†GATCT

RNISLX

1DFM

U49842

672

-

223

AGATC-1, TAGAT-1, AGAT-5, GATC-2, CTAG-2

EcoRI

G†AATTC

ENIPSR

1ERI

J01675

909

P00642

302

CGAATT-1, AGCTTA-1, TTCGA-2, AAGCT-3, AATTC-2, AATT-8, TTAA-6, TAAG-3, CTTA-3, TCGA-3, GAAT-4, AAGC-3, TTCG-1

EcoRV

GAT†ATC

NIPSR

1AZO

X00530

738

P04390

245

ATATCG-1, ATATC-1, GATAT-3, TATAG-1, ATAT-11, TATC-2, GATA-2, TATA-4, CTAT-2

NaeI

GCC†GGC

APRG

1IAW

U09581

954

-

317

GGCGCCGG-1, GCCGCGG-1, CGGCGC-2, GCCGCG-1, CGCGC-2, GCCGG-1, CGCGG-2, GCGGC-2, GGCCG-2, CGGCC-1, CGGC-3, CCGG-5, GGCG3, CCGC-4, GCCG-3, GGCC-1, CGCG-4

NgoMIV

G†CCGGC

APRG

1FIU

M86915

861

P31032

286

CCGGCG-1, GCCGC-4, GGCG-1, GCCG-3, CGCC-2, CCGC-1, GCGG-2, CGGC-2

PvuII

CAG†CTG

OSALCA

1PVI

AF305615

474

P23657

157

AGCT-2, GCTG-1

  1. AC#: accession number, N.A.: nucleic acid, A.A.: amino acid, †: cut site