TY - JOUR AU - Rossmann, M. G. AU - Moras, D. AU - Olsen, K. W. PY - 1974 DA - 1974// TI - Chemical and biological evolution of nucleotide-binding protein JO - Nature VL - 250 UR - https://doi.org/10.1038/250194a0 DO - 10.1038/250194a0 ID - Rossmann1974 ER - TY - JOUR AU - Lesk, A. M. AU - Chothia, C. PY - 1980 DA - 1980// TI - How different amino acid sequences determine similar protein structures: the structure and evolutionary dynamics of the globins JO - J Mol Biol VL - 136 UR - https://doi.org/10.1016/0022-2836(80)90373-3 DO - 10.1016/0022-2836(80)90373-3 ID - Lesk1980 ER - TY - JOUR AU - Reddy, B. V. AU - Li, W. W. AU - Shindyalov, I. N. AU - Bourne, P. E. PY - 2001 DA - 2001// TI - Conserved key amino acid positions (CKAAPs) derived from the analysis of common substructures in proteins JO - Proteins VL - 42 UR - https://doi.org/3.0.CO;2-R DO - 3.0.CO;2-R ID - Reddy2001 ER - TY - JOUR AU - Bernstein, F. C. AU - Koetzle, T. F. AU - Williams, G. J. AU - Meyer Jr, E. F. AU - Brice, M. D. AU - Rodgers, J. R. AU - Kennard, O. AU - Shimanouchi, T. AU - Tasumi, M. PY - 1977 DA - 1977// TI - The Protein Data Bank: a computer-based archival file for macromolecular structures JO - J Mol Biol VL - 112 UR - https://doi.org/10.1016/S0022-2836(77)80200-3 DO - 10.1016/S0022-2836(77)80200-3 ID - Bernstein1977 ER - TY - JOUR AU - Holm, L. AU - Sander, C. PY - 1994 DA - 1994// TI - The FSSP database of structurally aligned protein fold families JO - Nucleic Acids Res VL - 22 ID - Holm1994 ER - TY - JOUR AU - Murzin, A. G. AU - Brenner, S. E. AU - Hubbard, T. AU - Chothia, C. PY - 1995 DA - 1995// TI - SCOP: a structural classification of proteins database for the investigation of sequences and structures JO - J Mol Biol VL - 247 ID - Murzin1995 ER - TY - JOUR AU - Orengo, C. A. AU - Michie, A. D. AU - Jones, S. AU - Jones, D. T. AU - Swindells, M. B. AU - Thornton, J. M. PY - 1997 DA - 1997// TI - CATH-a hierarchic classification of protein domain structures JO - Structure VL - 5 UR - https://doi.org/10.1016/S0969-2126(97)00260-8 DO - 10.1016/S0969-2126(97)00260-8 ID - Orengo1997 ER - TY - JOUR AU - Blundell, T. L. AU - Bedarkar, S. AU - Rinderknecht, E. AU - Humbel, R. E. PY - 1978 DA - 1978// TI - Insulin-like growth factor 1. a model for tertiary structure accounting for immunoreactivity and receptor binding JO - Proc Natl Acad Sci (USA) VL - 75 UR - https://doi.org/10.1073/pnas.75.1.180 DO - 10.1073/pnas.75.1.180 ID - Blundell1978 ER - TY - JOUR AU - Chothia, C. PY - 1984 DA - 1984// TI - Principles that determine the structures of proteins JO - Ann Rev Biochem VL - 53 UR - https://doi.org/10.1146/annurev.bi.53.070184.002541 DO - 10.1146/annurev.bi.53.070184.002541 ID - Chothia1984 ER - TY - JOUR AU - Murthy, M. R. N. PY - 1984 DA - 1984// TI - A fast method of comparing protein structure JO - FEBS Letts VL - 168 UR - https://doi.org/10.1016/0014-5793(84)80214-8 DO - 10.1016/0014-5793(84)80214-8 ID - Murthy1984 ER - TY - JOUR AU - Holm, L. AU - Ouzounis, C. AU - Sander, C. AU - Tuparev, G. AU - Vriend, G. PY - 1992 DA - 1992// TI - A database of protein-structure families with common folding motifs JO - Protein Sci VL - 1 UR - https://doi.org/10.1002/pro.5560011217 DO - 10.1002/pro.5560011217 ID - Holm1992 ER - TY - JOUR AU - Russell, R. B. AU - Barton, G. J. PY - 1994 DA - 1994// TI - Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts, secondary structure and accessibility JO - J Mol Biol VL - 244 UR - https://doi.org/10.1006/jmbi.1994.1733 DO - 10.1006/jmbi.1994.1733 ID - Russell1994 ER - TY - JOUR AU - Orengo, C. A. AU - Jones, D. T. AU - Thornton, J. M. PY - 1994 DA - 1994// TI - Protein superfamilies and domain superfolds JO - Nature VL - 372 UR - https://doi.org/10.1038/372631a0 DO - 10.1038/372631a0 ID - Orengo1994 ER - TY - JOUR AU - Sowdhamini, R. AU - Burke, D. F. AU - Huang, J. F. AU - Mizuguchi, K. AU - Nagarajaram, H. A. AU - Srinivasan, N. AU - Steward, R. E. AU - Blundell, T. L. PY - 1998 DA - 1998// TI - CAMPASS: a database of structurally aligned protein superfamilies JO - Structure VL - 6 UR - https://doi.org/10.1016/S0969-2126(98)00110-5 DO - 10.1016/S0969-2126(98)00110-5 ID - Sowdhamini1998 ER - TY - JOUR AU - Mallika, V. AU - Bhaduri, A. AU - Sowdhamini, R. PY - 2002 DA - 2002// TI - PASS2: a semi-automated database of Protein Alignments Organised as Structural Superfamilies JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.284 DO - 10.1093/nar/30.1.284 ID - Mallika2002 ER - TY - JOUR AU - Kleywegt, G. J. AU - Jones, T. A. PY - 1994 DA - 1994// TI - A super position JO - CCP4/ESF-EACBM Newsletter on Protein Crystallography VL - 31 ID - Kleywegt1994 ER - TY - JOUR AU - Russell, R. B. AU - Barton, G. J. PY - 1992 DA - 1992// TI - Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts, secondary structure and accessibility JO - Proteins VL - 14 UR - https://doi.org/10.1002/prot.340140216 DO - 10.1002/prot.340140216 ID - Russell1992 ER - TY - JOUR AU - Mizuguchi, K. AU - Deane, C. M. AU - Blundell, T. L. AU - Johnson, M. S. AU - Overington, J. P. PY - 1998 DA - 1998// TI - JOY: protein sequence-structure representation and analysis JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.7.617 DO - 10.1093/bioinformatics/14.7.617 ID - Mizuguchi1998 ER - TY - JOUR AU - Sali, A. AU - Blundell, T. L. PY - 1990 DA - 1990// TI - Definition of general topology equivalence in protein structures-a procedure involving comparison of properties and relationships through simulated annealing and dynamic programming JO - J Mol Biol VL - 212 UR - https://doi.org/10.1016/0022-2836(90)90134-8 DO - 10.1016/0022-2836(90)90134-8 ID - Sali1990 ER - TY - JOUR AU - Sutcliffe, M. J. AU - Haneef, I. AU - Carney, D. AU - Blundell, T. L. PY - 1987 DA - 1987// TI - Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures JO - Protein Eng VL - 1 UR - https://doi.org/10.1093/protein/1.5.377 DO - 10.1093/protein/1.5.377 ID - Sutcliffe1987 ER - TY - JOUR AU - Altschul, S. F. AU - Madden, T. L. AU - Schaffer, A. A. AU - Zhang, J. AU - Zhang, Z. AU - Miller, W. AU - Lipman, D. J. PY - 1997 DA - 1997// TI - Gapped BLAST and PSI-BLAST: a new generation of protein database search programs JO - Nucleic Acids Res VL - 25 UR - https://doi.org/10.1093/nar/25.17.3389 DO - 10.1093/nar/25.17.3389 ID - Altschul1997 ER - TY - JOUR AU - Zhang, Z. AU - Schaffer, A. A. AU - Miller, W. AU - Madden, T. L. AU - Lipman, D. J. AU - Koonin, E. V. AU - Altschul, S. F. PY - 1998 DA - 1998// TI - Protein sequence similarity searches using patterns as seeds JO - Nucleic Acids Res VL - 26 UR - https://doi.org/10.1093/nar/26.17.3986 DO - 10.1093/nar/26.17.3986 ID - Zhang1998 ER - TY - JOUR AU - Eddy, S. R. PY - 1998 DA - 1998// TI - Profile hidden Markov models JO - Bioinformatics VL - 14 UR - https://doi.org/10.1093/bioinformatics/14.9.755 DO - 10.1093/bioinformatics/14.9.755 ID - Eddy1998 ER - TY - JOUR AU - Johnson, M. S. AU - Overington, J. P. AU - Blundell, T. L. PY - 1993 DA - 1993// TI - Alignment and searching for common protein folds using a data bank of structural templates JO - J Mol Biol VL - 231 UR - https://doi.org/10.1006/jmbi.1993.1323 DO - 10.1006/jmbi.1993.1323 ID - Johnson1993 ER - TY - JOUR AU - Park, J. AU - Karplus, K. AU - Barrett, C. AU - Hughey, R. AU - Haussler, D. AU - Hubbard, T. AU - Chothia, C. PY - 1998 DA - 1998// TI - Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods JO - J Mol Biol VL - 284 UR - https://doi.org/10.1006/jmbi.1998.2221 DO - 10.1006/jmbi.1998.2221 ID - Park1998 ER - TY - JOUR AU - Krogh, A. AU - Brown, M. AU - Mian, I. S. AU - Sjolander, K. AU - Haussler, D. PY - 1994 DA - 1994// TI - Hidden Markov models in computational biology: applications to protein modeling JO - J Mol Biol VL - 235 UR - https://doi.org/10.1006/jmbi.1994.1104 DO - 10.1006/jmbi.1994.1104 ID - Krogh1994 ER - TY - JOUR AU - Hughey, R. AU - Krogh, A. PY - 1996 DA - 1996// TI - Hidden Markov models for sequence analysis: extension and analysis of the basic method JO - CABIOS VL - 12 ID - Hughey1996 ER - TY - JOUR AU - Gough, J. AU - Karplus, K. AU - Hughey, R. AU - Chothia, C. PY - 2001 DA - 2001// TI - Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure JO - J Mol Biol VL - 313 UR - https://doi.org/10.1006/jmbi.2001.5080 DO - 10.1006/jmbi.2001.5080 ID - Gough2001 ER - TY - JOUR AU - Bhaduri, A. AU - Ravishankar, R. AU - Sowdhamini, R. PY - 2004 DA - 2004// TI - Conserved spatially interacting motifs of protein superfamilies: Application to fold recognition and function annotation of genome data JO - Proteins: Structure, Function and Bioinformatics VL - 54 UR - https://doi.org/10.1002/prot.10638 DO - 10.1002/prot.10638 ID - Bhaduri2004 ER - TY - JOUR AU - Chenna, R. AU - Sugawara, H. AU - Koike, T. AU - Lopez, R. AU - Gibson, T. J. AU - Higgins, D. G. AU - Thompson, J. D. PY - 2003 DA - 2003// TI - Multiple sequence alignment with the Clustal series of programs JO - Nucleic Acids Res VL - 31 UR - https://doi.org/10.1093/nar/gkg500 DO - 10.1093/nar/gkg500 ID - Chenna2003 ER - TY - JOUR AU - Chakrabarti, S. AU - Venkatramanan, K. AU - Sowdhamini, R. PY - 2003 DA - 2003// TI - SMoS: a database of structural motifs of superfamilies JO - Prot Engng VL - 16 UR - https://doi.org/10.1093/protein/gzg110 DO - 10.1093/protein/gzg110 ID - Chakrabarti2003 ER - TY - JOUR AU - Kraulis, P. J. PY - 1991 DA - 1991// TI - MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures JO - J Appl Cryst VL - 24 UR - https://doi.org/10.1107/S0021889891004399 DO - 10.1107/S0021889891004399 ID - Kraulis1991 ER -