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Table 1 Comparision of the number of hits obtained in HMMSearch using models derived from regular multiple sequence alignments and structure based sequence alignments.

From: PASS2: an automated database of protein alignments organised as structural superfamilies

Superfamily name SCOP code Hits obtained from PASS2 HMMs Hits obtained from superfamily HMMs
Superoxide dismutase 46609 152 137
Anticodon-binding domain of class I aminoacyl-tRNA synthetases 47323 220 182
Cyclophilin (peptidylprolyl isomerase) 50891 112 98
Hemopexin-like domain 50923 103 73