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Table 1 Categories of gene- and protein-pair attributes used

From: Predicting co-complexed protein pairs using genomic and proteomic data integration

Attribute ID

Description

Number of Attributes

References

I.

High-throughput screens (HTS) of interactions

11

[2, 3, 6, 7]

X.

Correlated mRNA expression

23

[42, 43]

R.

Same transcriptional regulator

229

[27]

L.

Same subcellular localization (high-throughput)

16

[44]

P.

Same knockout phenotype

181

[25]

H.

Sequence homology

4

[45]

U.

Gene fusion

1

[5]

N.

Gene neighborhood

1

[5]

O.

Gene co-occurrence in phylogenetic profiles

1

[5]