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Table 1 Categories of gene- and protein-pair attributes used

From: Predicting co-complexed protein pairs using genomic and proteomic data integration

Attribute ID Description Number of Attributes References
I. High-throughput screens (HTS) of interactions 11 [2, 3, 6, 7]
X. Correlated mRNA expression 23 [42, 43]
R. Same transcriptional regulator 229 [27]
L. Same subcellular localization (high-throughput) 16 [44]
P. Same knockout phenotype 181 [25]
H. Sequence homology 4 [45]
U. Gene fusion 1 [5]
N. Gene neighborhood 1 [5]
O. Gene co-occurrence in phylogenetic profiles 1 [5]