Figure 8
From: Pegasys: software for executing and integrating analyses of biological sequences

Workflow for genome annotation. This workflow executes ab initio gene prediction, tRNA detection, repeat detection, sequence similarity searching against protein and transcript databases and alignments of transcripts to genomic sequence. Results for all of these analyses are integrated into a single GAME XML output file that can be inputted into Apollo, where a user can create annotations on the original input sequence.