Skip to main content

Table 2 Significant motifs associated to ribosomal proteins. Here and in the following tables the column "TF" reports the transcription factors studied in Ref. [5] for which the intersection between the experimentally found targets of regulation and our sets is statistically significant.

From: Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs

motif

C

F

P

TF

ACCCATA

cytosolic ribosome (sensu Eukarya)

structural constituent of ribosome

-

FHL1 RAP1

ACCCATGC

cytosolic ribosome (sensu Eukarya)

-

-

FHL1 RAP1

ACCCGTAC

cytosolic ribosome (sensu Eukarya)

-

-

FHL1 RAP1

CCGCCTAC

cytosolic ribosome (sensu Eukarya)

-

-

FHL1 RAP1

CCGCCT

large ribosomal subunit

-

-

FHL1

 CCCGTACA

cytosolic ribosome (sensu Eukarya)

-

-

FHL1 RAP1

  CCATACAT

cytosolic ribosome (sensu Eukarya)

structural constituent of ribosome

-

FHL1

  CCATACA

cytosolic ribosome (sensu Eukarya)

structural constituent of ribosome

protein biosynthesis

FHL1 RAP1

  GCCTAG

cytosolic ribosome (sensu Eukarya)

-

-

FHL1

  GCCTAGAC

cytosolic ribosome (sensu Eukarya)

-

-

FHL1 RAP1

  GCCCA

cytosol

-

-

FHL1 RAP1

   CATACAT

cytosolic ribosome (sensu Eukarya)

-

-

FHL1

MCSCMTACAY