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Table 2 Significant motifs associated to ribosomal proteins. Here and in the following tables the column "TF" reports the transcription factors studied in Ref. [5] for which the intersection between the experimentally found targets of regulation and our sets is statistically significant.

From: Computational identification of transcription factor binding sites by functional analysis of sets of genes sharing overrep-resented upstream motifs

motif C F P TF
ACCCATA cytosolic ribosome (sensu Eukarya) structural constituent of ribosome - FHL1 RAP1
ACCCATGC cytosolic ribosome (sensu Eukarya) - - FHL1 RAP1
ACCCGTAC cytosolic ribosome (sensu Eukarya) - - FHL1 RAP1
CCGCCTAC cytosolic ribosome (sensu Eukarya) - - FHL1 RAP1
CCGCCT large ribosomal subunit - - FHL1
 CCCGTACA cytosolic ribosome (sensu Eukarya) - - FHL1 RAP1
  CCATACAT cytosolic ribosome (sensu Eukarya) structural constituent of ribosome - FHL1
  CCATACA cytosolic ribosome (sensu Eukarya) structural constituent of ribosome protein biosynthesis FHL1 RAP1
  GCCTAG cytosolic ribosome (sensu Eukarya) - - FHL1
  GCCTAGAC cytosolic ribosome (sensu Eukarya) - - FHL1 RAP1
  GCCCA cytosol - - FHL1 RAP1
   CATACAT cytosolic ribosome (sensu Eukarya) - - FHL1
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