Table 4 Prediction results. Predictions are given for each PB (noted from a to p), together with the prediction rate for the 16 PBs (Q16) and without the repetitive PBs (Q14) in loops (i.e., PBs m and d). The first prediction (init) considered all the sequence positions. The second (short loops 1) was the same but only for the short loop regions, i.e., 2 to 6 residues between two mm and/or dd series. The third (short loops 2) included specific learning for the short loops.
From: Use of a structural alphabet for analysis of short loops connecting repetitive structures
BP | init | short loops 1 | short loops 2 |
|---|---|---|---|
a | 59.9 | 66.3 | 63.2 |
b | 13.2 | 15.4 | 19.0 |
c | 27.0 | 31.7 | 43.0 |
d | 27.7 | -- | -- |
e | 37.1 | 35.9 | 44.1 |
f | 28.8 | 33.0 | 40.7 |
g | 28.1 | 27.1 | 26.2 |
h | 41.1 | 39.3 | 39.4 |
i | 36.3 | 35.7 | 34.9 |
j | 47.3 | 37.7 | 25.0 |
k | 37.8 | 38.8 | 38.3 |
l | 38.0 | 42.3 | 39.2 |
m | 39.3 | -- | -- |
n | 50.9 | 61.7 | 55.3 |
o | 49.6 | 58.3 | 50.5 |
p | 33.3 | 42.5 | 40.8 |
Q 16 | 35.2 | Â | Â |
Q 14 | 36.0 | 41.2 | 42.5 |