Table 3 PGDB and cross-validation statistics.
From: A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
Pathway/Genome Database | |||
|---|---|---|---|
MtbRv | Caulo | Vcho | |
pathways in PGDB | 146 | 139 | 172 |
incomplete pathways | 118 | 99 | 116 |
known reactions | 327 | 354 | 417 |
missing reactions | 313 | 255 | 276 |
cross-validation | |||
# true hits | 491 | 469 | 506 |
# false hits | 10093 | 9624 | 9151 |
positive predictive value at P > 0.9 | 0.66 | 0.67 | 0.79 |
true-positives at P > 0.9 | 325 | 371 | 449 |